BAC Information

Click to search

BAC

Clone NameMSMg01-397F22
Chromosome5 (Build37)
Map Location 15,379,647 - 15,380,037
singlet/doubletsinglet
Overlap gene4930519H02Rik
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream geneLOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397F22.T7 (MSMg01no397_f22.b1)MSMg01-397F22.TJ (MSMg01no397_f22.g1)
ACCAG497726AG497727
length809834
length of high quality
(start - end)		413 (37 - 449)374 (67 - 440)
definitionCHROMAT_FILE: MSMg01no397_f22.b1 PHD_FILE: MSMg01no397_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:47 2005CHROMAT_FILE: MSMg01no397_f22.g1 PHD_FILE: MSMg01no397_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTG
TTAATTACCTGGCATCACCCGACTGGCCCATGAACCTTTGTGGGTCATTT
TCTATTTTTTTTTCTATTTTTTTTTCCATTTTTTATTAGGTATTTAGCTC
ATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCC
ACTCCCCTACCCACCCACTTCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC
TGGGGCATATAAAGTTTGCGAGTCCAATGGGCCTCTCTTTCCAGTGATGG
CCGACTAGGCCATCTTTTGTATACATATGCAGCTAGAGTCAAGAGCTCCG
GGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCC
TTTAGCTCCTTGGGNACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGAT
CCATCCATTAGCTGACTGTGAGCATCCACTTTCTGTGTTTGCTAGGCCCC
GGCATAATCCCCCAAGAGACAGCTACTTCTGGGGCCTTTCAATAAAATCT
TGTTTGCGGATGTCACGGTGCCCCAATTTGCAAGCCCGATTAAGGGGTGC
AACCCGTGATTTGCAGATCTCCCTATTGTGCCCTCCCCTCTTTTACTTTC
TAATTTTGTCCCACGCCCTTCTTCCTTGGGGCTTTGACCCTCCTCCCCAC
TTCCCCCTCTTTTCTTCCTCCTTCTTTCACTTCCCCCCCTTATTCCTCTT
AGCTTCATTTTGTACCCCCTCAACTCCTCCTATTTATCTCTCTTTCTCGC
TCTTCTCTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGAAAAGATAAAAAGCAGCTAATTCAGCTTTT
GGCACCTCAATGTAAATCCTTTCTAATTTTGGAGTTTTAAGTGTATTCCA
ACTGAAAGCTGGTTGTCTGACTCATTACCCTTAGAGTCAGCCAAATTTTT
ATTCGGAGAAAAGAAAGAACTCTTTACTCTTATTTATAAACTAATAACAA
AGTTTTATTCACTTTATCTTTATAAGTGACATTCAAGATATATGAAAATA
AGAAGTCAATATAAAAAATTAAAAGTTTGTCCCAACTGGGAAGCAAGGAG
ATTTCAAAAAAAAAAAAATAACATTAAAGTAAATAGTGTACTCTCTTTAG
ACATTCACTATGATATTTCCACCACAGAAATAATTACATGTTAGGTAAAA
GTAGCAATTAGAAAAAGGCAAAAAAGCTATTGGAAAGAAAATGTATAATT
CTTATCCCTATATGAAGTTTTGGTAGAAAAAAAACCTTTACTTTTTGAGG
ACGAAAAATCCCTGAAAAAAAATGGTTGGAAAGGGATTTTGACCGAATAT
AAAGTTTATACCCCCAATAAAGGCTTAAGAATACTTTTTACCCTTTCTGG
CGGGAGAGGTTTTTTTTTATAAATTATTCCCCCCCTCCCCCCCCCATGGT
TAAATAATCTTCTGTTCCATTGCTAACAGTGTCCCCTCCTCTCTCATGTC
TTCTCGGTTGACACTCCTCTCTTGTTCCCTGTGTTGTCCTCAACTTCCTT
CTCTAAGATCCATGTCTTCTATTCATCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_f22.g1 MSMg01no397_f22.g1 CHROMAT_FILE:
MSMg01no397_f22.g1 PHD_FILE: MSMg01no397_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:47 2005
         (374 letters)



>mm_chr5_15379535_15380309
          Length = 775

 Score =  683 bits (353), Expect = 0.0
 Identities = 374/391 (95%), Gaps = 17/391 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaaaagataaaaagcagctaattcagcttttggcacctcaatgtaaatcctttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctgaaaagataaaaagcagctaattcagcttttggcacctcaatgtaaatcctttctaa 444

                                                                       
Query: 61  ttttggagttttaagtgtattccaactgaaagctggttgtctgactcattacccttagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttttggagttttaagtgtattccaactgaaagctggttgtctgactcattacccttagag 384

                                                                       
Query: 121 tcagccaaatttttattcggagaaaagaaagaactctttactcttatttataaactaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcagccaaatttttattcggagaaaagaaagaactctttactcttatttataaactaata 324

                                                                       
Query: 181 acaaagttttattcactttatctttataagtgacattcaagatatatgaaaataagaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaaagttttattcactttatctttataagtgacattcaagatatatgaaaataagaagt 264

                                                                       
Query: 241 caatataaaaaattaaaagtttgtcccaactgggaagcaaggagatttc-aaaaaaaaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 caatataaaaaattaaaagtttgtcccaactgggaagcaaggagatttccaaaaaaaaaa 204

                                                                       
Query: 300 aaa----------------taacattaaagtaaatagtgtactctctttagacattcact 343
           |||                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaaaaaaaaaaaccaaaataacattaaagtaaatagtgtactctctttagacattcact 144

                                          
Query: 344 atgatatttccaccacagaaataattacatg 374
           |||||||||||||||||||||||||||||||
Sbjct: 143 atgatatttccaccacagaaataattacatg 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space:   279590
Effective search space used:   279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |