BAC Information

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BAC

Clone NameMSMg01-397I16
Chromosome5 (Build37)
Map Location 14,572,114 - 14,572,361
singlet/doubletsinglet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397I16.T7 (MSMg01no397_i16.b1)MSMg01-397I16.TJ (MSMg01no397_i16.g1)
ACCAG497857AG497858
length783777
length of high quality
(start - end)
349 (68 - 416)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no397_i16.b1 PHD_FILE: MSMg01no397_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005CHROMAT_FILE: MSMg01no397_i16.g1 PHD_FILE: MSMg01no397_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGCATCCGCGGAATTCT
CACCTGTTGCCTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATT
GGACATAGTACTACCTTTTTATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTATCCCAATGGATG
GACCCGGAGGGTATCCATCCTGAGTTAGGGAACACACTTCCCAAGGAACT
TCATACCACATTTTCCTATCGATACCTGGAATTTACTCCCCCACCAAGAA
TCTCTTAATTTTTATACCCTTTTTCCCCCCCCTTTAACTCCCCACAAAAT
GAACCTAGCGTGTGGGTCTCTTTCTCTCTCCCTATAATGGGGCAATTACC
CCCTTCCCTTTTTTCTTTACACCATACCTTTTC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGAAATTCTGCAGGAACACAAAACAACAAGCCACTCTCC
ATCCTTCTGGGTTCAGCTGCTATGAACTCAAGTGACTTTCTTTCCATGTG
TGCTGTGTTTGAATCCCCAATTAAATAAATATATTTTGTTTTCTTTGTCA
CAGGAAAAAAATAACTGTAGGATATATAAGATTTTTATTAAGAAAATAAA
TAAGCATTTGAAAGTTTAGTTATAAAAATTTTGTTAATGACTTAGTACTA
TCTAAGAACAAAGAGTATTTTTTTAAGCACCCTTTCTAAACATTTCCAGC
TAAACATCAGATTCCAAGAACACTTCAGAGTTAAGTCAGTTCTTCATTGT
TGTGGTGAAACCCCCACATAATTGCTATCTACCATTCACAGCTGTACATC
CTAATACCTATCAATGCTAGTGACTTCCATCTTTTACTTTGATGTTTCCC
CCTGCCCCCGTCCTTGGCATTTTATTCTGCCCCACAAAAACATTCCAACA
GCGTGTTTGTTTTAAACTAAACCCTTCCCCCCGCACTCTCCCTACAATAC
TACATCCGCCCCCTTACTGTATACAATTCTTACTCTTCTTCAATCAATCC
CCTTTTATTTTTTTTGGGTCTTAAACGGCCACCACCCTTATTATCAATAT
TAATATTTCCTCATTTCTATCCTATCATTTTTTATATTCTTTCTTCTCTC
TCTTACCATAACCCTTCTTTCTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_i16.g1 MSMg01no397_i16.g1 CHROMAT_FILE:
MSMg01no397_i16.g1 PHD_FILE: MSMg01no397_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:00 2005
         (249 letters)



>mm_chr5_14571914_14572562
          Length = 649

 Score =  433 bits (224), Expect = e-126
 Identities = 242/248 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcaggaacacaaaacaacaagccactctccatccttctgggttcagctgctatgaac 60
           |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 201 tctgcaggaacacaaaccaacaagctaccctccatccttctgggttcagctgctatgaac 260

                                                                       
Query: 61  tcaagtgactttctttccatgtgtgctgtgtttgaatccccaattaaataaatatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagtgactttctttccatgtgtgctgtgtttgaatccccaattaaataaatatatttt 320

                                                                       
Query: 121 gttttctttgtcacaggaaaaaaataactgtaggatatataagatttttattaagaaaat 180
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 321 gttttctttgtcacaggaaaaaaataactgtagggtatatacgatttttattaagaaaat 380

                                                                       
Query: 181 aaataagcatttgaaagtttagttataaaaattttgttaatgacttagtactatctaaga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaagcatttgaaagtttagttataaaaattttgttaatgacttagtactatctaaga 440

                   
Query: 241 acaaagag 248
           ||||||||
Sbjct: 441 acaaagag 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)