BAC Information

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BAC

Clone NameMSMg01-397N09
Chromosome5 (Build37)
Map Location 59,234,494 - 59,234,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N09.T7 (MSMg01no397_n09.b1)MSMg01-397N09.TJ (MSMg01no397_n09.g1)
ACCAG498082AG498083
length776797
length of high quality
(start - end)
273 (48 - 320)342 (80 - 421)
definitionCHROMAT_FILE: MSMg01no397_n09.b1 PHD_FILE: MSMg01no397_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:23 2005CHROMAT_FILE: MSMg01no397_n09.g1 PHD_FILE: MSMg01no397_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTACCGTTCCCTACTGAATGGCTGTGAAACACCTGAAAAAATG
TTCAACATCCCTAATCATCAGGGAAATGCAAATTAAAACAACCCTCAGAT
TCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTAGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTACTCA
GAAAATTGGACATAGTACTACCTTATGATCCCGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCTCCAACTAGTAAGAAAGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGAGAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAAAAAATGTGATACATTTACCTCACG
GATTGCTATTCAGTTATTAAAAGAAATGATTTTTTGAAATTCCTACACCA
ATGGGTTGGCTCCTAAGGGCTTAATCCTCATTGGAGTGACCCCCCGCCCC
ACACCAACCCCAAGGACATGTACCCTTCGACAATGGGGACATTCCCTCCT
AACCTCAGATACTTCACATTATCGTCTCCTTTTTTTTTACACCCCGCTCT
TCCTTTTCCTAGTCCCCTCCCCCTTGTGGTCCCCTTGTCCCTCCTTCTCA
CATAGCGTATCCTATCTACCTCTGCN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATATTCTCATTTTACTGG
CCAATAGATATTGCTCTTTTTGTCCCAATTTCTGTCTGAATTATGAATAT
TTAATGATTGATTCAACTAATTTGAGCATTTGCCATCATGACTAAAGCTG
TGAAATCTAGTCAATCATTTGCTGAATACTTAATCCTCAAGATTACTTGT
GTTTTGTGATTCTTTTATTCTTCCTAAAAGAAAATCACTCATAAATAAGG
AAAATACTTTGATATTAATAACATAATTATGTTAATCACTTATATGTGAA
TAACTTGTTGCAAAAGTCAAATTTTCTCTGATGTCAACATTGTTGTTTTT
AATTTAATATTTATTGACACAAATATTATGATATCCCATGTTCCATATAT
ATATAATGCCTTATCCTTATGACATTTCCTTACATACTATATTTTATTTC
TCCCGATTCTTGCAACTGCTTTACGATCCTTACCTACCTTTCTCCCCTTC
CTTTTCCCTCTTTTTCCTTAATATATCCCCCCTCTACCTGTTTTCTACCC
TTTGTCTTTCCCCTTTTAAACACCCTTTCTTCTCAACTCTTTTTTCCTTT
ATCTCTTCTTTTCAACCTTCTTATTCCTCCATTCCCTCTTTTACTTTCTT
TTTTCAACATCCTTCCTTCCTTATTTCCTTTTTTTCTCCCCTTCAACTAT
TTTATCTCTTCCTCATTATATTCCCTCATTCCTCCTCCTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n09.g1 MSMg01no397_n09.g1 CHROMAT_FILE:
MSMg01no397_n09.g1 PHD_FILE: MSMg01no397_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:24 2005
         (342 letters)



>mm_chr5_59234293_59235034
          Length = 742

 Score =  613 bits (317), Expect = e-180
 Identities = 332/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaatattctcattttactggccaatagatattgctctttttgtcccaatttctgtctgaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaatattctcattttactggccaatagatattgctctttttgtcccaatttctgtctgaa 261

                                                                       
Query: 62  ttatgaatatttaatgattgattcaactaatttgagcatttgccatcatgactaaagctg 121
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttatgagtatttaatgattgattcaactaatttgagcatttgccatcatgactaaagctg 321

                                                                       
Query: 122 tgaaatctagtcaatcatttgctgaatacttaatcctcaagattacttgtgttttgtgat 181
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 tgaaatctagtcaatcatttgctgaatatttaatcctcaagattacttgtgttttgtgat 381

                                                                       
Query: 182 tcttttattcttcctaaaagaaaatcactcataaataaggaaaatactttgatattaata 241
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 tcttttattcttcctaaaagaaaatcactcataaataaagaaaatactttgatattaata 441

                                                                       
Query: 242 acataattatgttaatcacttatatgtgaataacttgttgcaaaagtcaaattttctctg 301
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 acagaattatgttaatcacttatatgtgaataactttttgcaaaagtcaaattttctctg 501

                                                
Query: 302 atgtcaacattgttgtttttaatttaatatttattga 338
           |||||||||||||||||||||||||||||||||||||
Sbjct: 502 atgtcaacattgttgtttttaatttaatatttattga 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)