Query= MSMg01no398_b18.b1 MSMg01no398_b18.b1 CHROMAT_FILE:
MSMg01no398_b18.b1 PHD_FILE: MSMg01no398_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:45 2005
(630 letters)
>mm_chr5_43286935_43287961
Length = 1027
Score = 1110 bits (574), Expect = 0.0
Identities = 613/626 (97%), Gaps = 3/626 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaagattttcccactgatacaaaacagacaaagatatcaagtttatttgtaaaa 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattcaaagatattaaaactgatacaaaacagacaaagatatcaagtttatttgtaaaa 768
Query: 65 ataatagataaccccaaagagcatgcaaataggcagatgaatccagtcttcaaccaggag 124
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 767 ataatagataaccccaaagagcatacaaataggcagatgaatccagtcttgaaccaggag 708
Query: 125 aggaagcttgtgtgatatgaaaaaaaggaacaaataagatgaaagaactgaaaatatgta 184
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aggaagcttg-gtgatatg-aaaaaaggaacaaataagatgaaagaactgaaaatatgta 650
Query: 185 tgaaaaataatcaacatagaaaaaattcagaaaggatttgagagtttagaaaaataaata 244
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 649 tgaaaaattatcaacatagaaaaaattcagaaaggatttgagagtttag-aaaataaata 591
Query: 245 gatgaatcaatagatgaaatttaaaaccacagtgaaaaatatcatcaatatactcagtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gatgaatcaatagatgaaatttaaaaccacagtgaaaaatatcatcaatatactcagtta 531
Query: 305 tgcaaaagttatcaagaattgaggacagagtttgatgtatactataataaatattagtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgcaaaagttatcaagaattgaggacagagtttgatgtatactataataaatattagtga 471
Query: 365 gaaaaatacaatatatgagcatgaccaaaacattcaagagctctcagatattattaggat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaaaaatacaatatatgagcatgaccaaaacattcaagagctctcagatattattaggat 411
Query: 425 aaaaaggttaaaaatcatgggatgaaacaaagagttgaagcaaaaaattaaagacattga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 410 aaaaaggttaaaaatcatgggatgaaacaaagagttgaagcaaaaaattaaaggcattga 351
Query: 485 taatgtattcaataaaattatagcatcaatttctcagacatagaaagaaaatagacatcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taatgtattcaataaaattatagcatcaatttctcagacatagaaagaaaatagacatcc 291
Query: 545 aaagcctagaggcaaatcaacatgactagatctctgatgacacagtttcaagatatcaaa 604
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 290 aaaggctagaggcaaatcaacatgactagatctctgatgacacagtttcaagatatctaa 231
Query: 605 ataagtttaagaactgacaaattaga 630
||||||||||||||||||||||||||
Sbjct: 230 ataagtttaagaactgacaaattaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1027
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1017
Effective search space: 630540
Effective search space used: 630540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_b18.g1 MSMg01no398_b18.g1 CHROMAT_FILE:
MSMg01no398_b18.g1 PHD_FILE: MSMg01no398_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:45 2005
(528 letters)
>mm_chr5_43171711_43172634
Length = 924
Score = 932 bits (482), Expect = 0.0
Identities = 515/528 (97%), Gaps = 4/528 (0%)
Strand = Plus / Plus
Query: 1 cttttgtaatagaaaataaataaatctgtcatattggtggcttggtaccttttgacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttgtaatagaaaataaataaatctgtcatattggtggcttggtaccttttgacttct 260
Query: 61 gttctagtcctcatgatgagtgtgcctcacattatttgtgttgaaatatttccttatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctagtcctcatgatgagtgtgcctcacattatttgtgttgaaatatttccttatttt 320
Query: 121 aaaagcataggctagacttattcacttaacaacaatgtatttgcttgaaagaataaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagcataggctagacttattcacttaacaacaatgtatttgcttgaaagaataaatgt 380
Query: 181 aagtctctctatctttccctcctcctccttttctcccactcccctctgtgtttatcttaa 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtct----atctttccctcctcctccttttctcccactcccctctgtgtttatcttaa 436
Query: 241 gactaactccagggttttaggcagataggagaatctgcaatccaccactaagctataaat 300
||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 437 gacaaactccagggttttaggcagataggagaatcttcaatccaccactcagctataaat 496
Query: 301 gagttgatctcatttacaaagccctgcttccttttgccttctggtccctgctctggtggt 360
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 497 gagttgatctcatttacaaagccctgcttcctttttccttctggcccctgctctggtggt 556
Query: 361 aaagtgaggcttcactcccctgcactggtcaaacagttctgaggttagagtctccgaagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaagtgaggcttcactcccctgcactggtcaaacagttctgaggttagagtctccgaagt 616
Query: 421 gttcatttttagacttagtaatcacaaatgagatattctagctacctccctcatattttg 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 617 gttcatttttagacttagtaatcacaaatgagatattctagctacttccctcatattttg 676
Query: 481 aatgtttttattttaaaatcatttaacctcacataaatgtcgcaaata 528
|||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 677 aatgtttttattttaaaatcatttaacctcccataaatgtcacaaata 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 924
Length adjustment: 10
Effective length of query: 518
Effective length of database: 914
Effective search space: 473452
Effective search space used: 473452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
