Query= MSMg01no398_e19.b1 MSMg01no398_e19.b1 CHROMAT_FILE:
MSMg01no398_e19.b1 PHD_FILE: MSMg01no398_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:59 2005
(552 letters)
>mm_chr5_151249052_151250002
Length = 951
Score = 1021 bits (528), Expect = 0.0
Identities = 540/544 (99%), Gaps = 1/544 (0%)
Strand = Plus / Plus
Query: 1 ccagaacttgtctcaataaactaatcaattaaaatttatggtggctactccgggaacacc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagaacttgtctcagtaaactaatcaattaaaatttatggtggctactccgggaacacc 260
Query: 61 aggaaaatgatgccttaacggctcatgtaggtttctttaaaaccttgataatgtccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaaatgatgccttaacggctcatgtaggtttctttaaaaccttgataatgtccagaa 320
Query: 121 actgtccacagttcggagggcgctttctccaccatcctccccacagaggacattgatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtccacagttcggagggcgctttctccaccatcctccccacagaggacattgatatg 380
Query: 181 agtgacctccgaccggtgccagaaagccaataagttttctgccatcctgagaccgaccag 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 agtgacctccgaccggtgccagaaagccaataagttttctgccatcctgtgaccgaccag 440
Query: 241 agtctgatcatagaacttctggagctgcaggcccacttgcagggcgaagcggctgcgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctgatcatagaacttctggagctgcaggcccacttgcagggcgaagcggctgcgcct 500
Query: 301 gcggctgcgcggtaccattttgaggacattggcggggtgcagggggctagggctgcgcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcggctgcgcggtaccattttgaggacattggcggggtgcagggggctagggctgcgcac 560
Query: 361 gtgctatctgtgcagcctcactgcttggaggacttatccccgagaggctgctgtcaggat 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctatctgtgcagcctcactgcttgaaggacttatccccgagaggctgctgtcaggat 620
Query: 421 gcctgggtccttcctggcaagcagcaggtagcaaaggatgccgcactgcatcaggccttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctgggtccttcctggcaagcagcaggtagcaaaggatgccgcactgcatcaggccttg 680
Query: 481 cttcggccgccccaggatcagactgatcttttgctcaccttcagtcagtctccccccccc 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 cttcggccgccccaggatcagactgatcttttgctcaccttcagtcagtc-ccccccccc 739
Query: 541 cccc 544
||||
Sbjct: 740 cccc 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_e19.g1 MSMg01no398_e19.g1 CHROMAT_FILE:
MSMg01no398_e19.g1 PHD_FILE: MSMg01no398_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:59 2005
(431 letters)
>mm_chr5_151439212_151440043
Length = 832
Score = 781 bits (404), Expect = 0.0
Identities = 425/432 (98%), Gaps = 1/432 (0%)
Strand = Plus / Minus
Query: 1 atccaaagctgtcataattatcacctccagttggagttctgatctcgggtttggtttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atccaaagctgtcataattatcacctccagttggagttctgatctcgggtttggtttgtt 573
Query: 61 tctatatatatcaaaatgaaagaacatttgtttaggaaggacttgtagattgttttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tctatatatatcaaaatgaaagaacatttgtttaggaaggacttgtagattgttttttct 513
Query: 121 caatagttttagaagtcatgtttcttttctttcatagtctttttctgtatgtgctttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caatagttttagaagtcatgtttcttttctttcatagtctttttctgtatgtgctttcct 453
Query: 181 tctgttttctgcttagcagtcttcctgtagccacgtggcattcttagtaaggatggtagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tctgttttctgcttagcagtcttcctgtagccacgtggcattcttagtaaggatggtagg 393
Query: 241 tttttttctagcagaactctgtatctgctttttccttcctgtgatccactgattccagtg 300
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taagtgcctagcagaactctgtatctgctttttccttcctgtgatccactgattccagtg 333
Query: 301 tctgcgtgagcttcacccgtggctgcaggtcagcacttattctcttgaccctgtgggtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tctgcgtgagcttcacccgtggctgcaggtcagcacttattctcttgaccctgtgggtta 273
Query: 361 gtacaattttgatacaaaaggcttatttgacaggctta-ttttaaaaaaatctattgttg 419
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 272 gtacaattttgatacaaaaggcttatttgaaaggcttatttttaaaaaaatctattgttg 213
Query: 420 tgatactcattg 431
||||||||||||
Sbjct: 212 tgatactcattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space: 347306
Effective search space used: 347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
