BAC Information

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BAC

Clone NameMSMg01-398I20
Chromosome5 (Build37)
Map Location 46,560,044 - 46,560,372
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398I20.T7 (MSMg01no398_i20.b1)MSMg01-398I20.TJ (MSMg01no398_i20.g1)
ACCAG498627AG498628
length740738
length of high quality
(start - end)
397 (72 - 468)547 (79 - 625)
definitionCHROMAT_FILE: MSMg01no398_i20.b1 PHD_FILE: MSMg01no398_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:19 2005CHROMAT_FILE: MSMg01no398_i20.g1 PHD_FILE: MSMg01no398_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCCATGCCCTAGAACCTCCAGGAGTCTAATGCAGGTTT
ATTCTGCAGAAAAAGCAGAACAGGACAGTGAAACTGCTAATTGCCAAAGA
ACCCTTGAAACAAGCAGAGAATGAGTGCCTTGCTTCTACCACAGACTAAA
GGAAATAAATGAGGACTGCATAACAAGAAAAAGCAGATACACACTCAGTG
TTTGATATGGTACAGAAGTCAGCTATAGCTAGTTGTGGTTGGCAAGGAGT
CAAAGGAAGACACAGAAATGGTAACATTTATGCTAGGAAAATGTTAACCA
TTCAGGTGCCCTCCATCATTGGAGGACACTCTCCCAGGGAGACTAAGAGG
CCCACAGAGAAGCAGTGAACCATCGTGATTGCTTAGGGTCATGTAGTTAG
TTTTCTTTATTTGGTTCCAATTTTAAAGTGGAGAGAGTTGAAAAATTAGG
GAAACTTAGTTATTAATCAAACCTTGAGCACTTAAGGGCTGATTGTGACA
GCAGCTATTATTTGGCTCCCTGGTTAGCTGCTACAGGCTGTAAGTTAGAA
GTCCATTTTTATATAAATTGCCTGAAATACGGCCCACTTAACAAAGCCCG
GTTTTTCATTCTTTTGGCTCCCAAAATTGTTTCCCCAAAATAAACCTCCC
TTATTCCTATGGGAAAAACAAACCCCCCCCGGTTTTTAAG
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACATGAGGAATACCGAATGG
CTGAGAAGCACCTGAAAAAATGTTCAGCATCCTCAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGAATTGCAAGCTTGTTCAACCACTCTGG
AAATCAGTATGGAGGTTCCTCTTTATTGGACATTGTACTACCAGAGGATC
CTGCAGTACTACTCCTGGGCATATATCTAGAAGATGTTCCAACCGGTAAG
AAGGTCACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGGTGGAAAGAACCCAGATACCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGAAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGANATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAGGAACTCTCACAATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTANGATACCCAAGATATAAGATATAATTTG
CTAAACCCATTAACCTCCAGAGAAAGAAGACCACAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_i20.b1 MSMg01no398_i20.b1 CHROMAT_FILE:
MSMg01no398_i20.b1 PHD_FILE: MSMg01no398_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:19 2005
         (397 letters)



>mm_chr5_46560044_46560840
          Length = 797

 Score =  605 bits (313), Expect = e-177
 Identities = 326/331 (98%), Gaps = 2/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaacctccaggagtctaatgcaggtttattctgcagaaaaagcagaacaggacagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tagaacctccaggagtctaatgcaggtttattctgcagaaaaagcagaacaggacagtga 270

                                                                       
Query: 61  aactgctaattgccaaagaacccttgaaacaagcagagaatgagtgccttgcttctacca 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aactgctaattgtcaaagaacccttgaaacaagcagagaatgagtgccttgcttctacca 210

                                                                       
Query: 121 cagactaaaggaaataaatgaggactgcataacaagaaaaagcagatacacactcagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cagactaaaggaaataaatgaggactgcataacaagaaaaagcagatacacactcagtgt 150

                                                                       
Query: 181 ttgatatggtacagaagtcagctatagctagttgtggttggcaaggagtcaaaggaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttgatatggtacagaagtcagctatagctagttgtggttggcaaggagtcaaaggaagac 90

                                                                       
Query: 241 acagaaatggtaacatttatgctaggaaaatgttaaccattcaggtgccctccatcattg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  acagaaatgggaacatttatgctaggaaaatgttaaccattcaggtgccctccatcattg 30

                                          
Query: 301 gaggacactctcccagggagactaagaggcc 331
           |||| ||||||||||||||||||  ||||||
Sbjct: 29  gaggccactctcccagggagact--gaggcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)