Query= MSMg01no398_l24.b1 MSMg01no398_l24.b1 CHROMAT_FILE:
MSMg01no398_l24.b1 PHD_FILE: MSMg01no398_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:34 2005
(485 letters)
>mm_chr5_24850318_24851203
Length = 886
Score = 855 bits (442), Expect = 0.0
Identities = 466/474 (98%), Gaps = 3/474 (0%)
Strand = Plus / Minus
Query: 14 aagat-ttccaaaacttagaaatgtgctttaagatctttgtacaatgtaagagcttattt 72
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aagatgtt-caaaacttagaaatgtgctttaagatctttgtacaatgtaagagcttattt 636
Query: 73 gtttatacataactatgtatgctggtaagctatgaaattactgtatttttctagaaagta 132
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 635 gtttatacataactatgcatgctggtaagctatgaaattactgtatttttctagaaagca 576
Query: 133 agtgccacatatttataaacatggctcttatttcaggctggagggagcagttaccagata 192
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agtaccacatatttataaacatggctcttatttcaggctggagggagcagttaccagata 516
Query: 193 ccctagttgatgagcctgtttctgttgctgagaacactgacaaaataaagaagagatacc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ccctagttgatgagcctgtttctgttgctgagaacactgacaaaataaagaagagatacc 456
Query: 253 gaaaaaggaaaaataagcttgaataaacctttcctgcttatttacaagtaatattttgct 312
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaaaaaggaaaaataagcttgaagaaacctttcctgcttatttacaagtaatattttgct 396
Query: 313 ttatatttattatgtggtttgcaaacttaggaaatgtattgagg-ttttttaactgcttg 371
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 395 ttatatttattatgtggtttgcaaacttaggaaatgtattgaggtttttttaactgcttg 336
Query: 372 tttttgttaacatcctactcattctgtataattgttcactgattcctataaatgacattt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttttgttaacatcctactcattctgtataattgttcactgattcctataaatgacattt 276
Query: 432 accagactccatctaagaatgaatatctgttttgttcttggtgtgctttgatat 485
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 accaggctccatctaagaatgaatatctgttttgttcttggtgtgctttgatat 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 886
Length adjustment: 10
Effective length of query: 475
Effective length of database: 876
Effective search space: 416100
Effective search space used: 416100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_l24.g1 MSMg01no398_l24.g1 CHROMAT_FILE:
MSMg01no398_l24.g1 PHD_FILE: MSMg01no398_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:35 2005
(465 letters)
>mm_chr5_24659734_24660597
Length = 864
Score = 845 bits (437), Expect = 0.0
Identities = 458/465 (98%), Gaps = 1/465 (0%)
Strand = Plus / Plus
Query: 1 agtggagctgataaacatgtttgccttggcacagggacacccgccccagctccctgcttc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agtggagctgataaacatgtttgccttggcacagggacacgcgccccagctccctgcttc 260
Query: 61 cttggcttctcaaccactgcaaagtgatgtgcctgacgggggctgtagtacccccattca 120
|||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct: 261 cttggcctctcaaccactgcagactgatgtgcctgacgggggctgtagtacccc-attca 319
Query: 121 cctctctgcagctgcctggcagagtctcagatgacaacagctgctgaaggaggtcagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctctctgcagctgcctggcagagtctcagatgacaacagctgctgaaggaggtcagaga 379
Query: 181 ataacaactgcagaaaatgggaattatgagagcaaagagtctgtcattgtaaagcccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataacaactgcagaaaatgggaattatgagagcaaagagtctgtcattgtaaagcccaga 439
Query: 241 tctttcttatgaagcttgaggctcaccaccaggcagggtgatgccttctggaacgttatc 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctttcccatgaagcttgaggctcaccaccaggcagggtgatgccttctggaacgttatc 499
Query: 301 ctgcacattggacagtcatcaaatagaaggaaaattcatgattgtgctaaaacccagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgcacattggacagtcatcaaatagaaggaaaattcatgattgtgctaaaacccagcct 559
Query: 361 ttcgtctttcattcatttatccactgtctttgtgtggtaaatgctaattaagttgctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcgtctttcattcatttatccactgtctttgtgtggtaaatgctaattaagttgctttt 619
Query: 421 ctgttgcagacactgctgagagctggggtcatagaacaagggatt 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgttgcagacactgctgagagctggggtcatagaacaagggatt 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 864
Length adjustment: 10
Effective length of query: 455
Effective length of database: 854
Effective search space: 388570
Effective search space used: 388570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
