Query= MSMg01no398_n05.b1 MSMg01no398_n05.b1 CHROMAT_FILE:
MSMg01no398_n05.b1 PHD_FILE: MSMg01no398_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:40 2005
(348 letters)
>mm_chr5_13323093_13323839
Length = 747
Score = 596 bits (308), Expect = e-175
Identities = 338/348 (97%), Gaps = 1/348 (0%)
Strand = Plus / Minus
Query: 1 tcaaccaatgtccactattattaaaatatttctatagcattgagatatttttttcttcta 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 501 tcaaccaatgtccactattattaaaatatttctatagcattgagata-ttttttcctcta 443
Query: 61 tcacttcagaatataggaaataacagaatggattatctttttgcatcccagaagccatag 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcacttcagaatataggaaatgacagaatggattatctttttgcatcccagaagccatag 383
Query: 121 aaaagtagaatttattggacattaatctaccatgatctctttaataacacataaatttat 180
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 382 aaaagtagaatttattggacattaatctaccatgatctctttaataatacgtaaatttat 323
Query: 181 gtcttaaactaactttgctttgagcaggtgacatctagagaaatccgctatttgccttta 240
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 322 gtcttaaactaactttgctttgagcaggtgacatctagaaaaatctgctatttgccttta 263
Query: 241 tcttagaacccatcctttctgaacatagtctaataaacttcagctatgctctcatgatat 300
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 262 tcttagaacccatcctttctgaacatagtctaataaatttcagcgatgctctcatgatat 203
Query: 301 tctaatttatttatttatttatttatttatttatttatttatttattt 348
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tcaaatttatttatttatttatttatttatttatttatttatttattt 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 14
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 747
Length adjustment: 9
Effective length of query: 339
Effective length of database: 738
Effective search space: 250182
Effective search space used: 250182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_n05.g1 MSMg01no398_n05.g1 CHROMAT_FILE:
MSMg01no398_n05.g1 PHD_FILE: MSMg01no398_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:41 2005
(461 letters)
>mm_chr5_13130772_13131631
Length = 860
Score = 816 bits (422), Expect = 0.0
Identities = 442/449 (98%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 13 atcttattagtaaccaacatctgttttattgttaatcatataaactttgtctttggaagg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atcttattagtaaccaacatctgttttattgttaatcatataaactttgtctttggaagg 272
Query: 73 aaataacagggaatggttagactctattatacttctgtcaaaattttggtagtgaaacct 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaataacagggaatggttagactctattatacttctgtcaaaattttggtagtgaaacct 332
Query: 133 tacttatagtggcaagtattaatacaccttaattttgcaccaattttttttcttgaaaat 192
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 333 tacttatagtggcaagtattaatacaccttaattttgcaccaattttttt-cttgaaaat 391
Query: 193 agtatttcagtcctgttacaatcagtagttcttatataagtcaagtactattaattatgt 252
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 392 agtatttcagtcctgttacaatcagttgttcttatataagtcaagtactattaattatgc 451
Query: 253 acttatttttatatctgtacttacattttactgaattaccaaactaagattctgtggagt 312
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 452 acttatttttgtatctgtacttacattttactgaattatcaaactaagattctgtggagt 511
Query: 313 agtgagcatgaaatgaaaacatagtgtgctgctggagaagtatagtcttgctttcaggat 372
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtgagcatgaaatgaaaacatggtgtgctgctggagaagtatagtcttgctttcaggat 571
Query: 373 gaaaagaatatccacttggcatatgatcgtatcanaatgattttggagagaattttagaa 432
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 572 gaaaagaatatccacttggcatatgatcgtatcaaaatgattttggagagaattttagaa 631
Query: 433 tttgaactttaagacaagaaatagacata 461
|||||||||||||||||||||||||||||
Sbjct: 632 tttgaactttaagacaagaaatagacata 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space: 383350
Effective search space used: 383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
