BAC Information

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BAC

Clone NameMSMg01-399I24
Chromosome5 (Build37)
Map Location 82,158,962 - 82,159,220
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399I24.T7 (MSMg01no399_i24.b1)MSMg01-399I24.TJ (MSMg01no399_i24.g1)
ACCAG499396AG499397
length719724
length of high quality
(start - end)
57 (264 - 320)259 (77 - 335)
definitionCHROMAT_FILE: MSMg01no399_i24.b1 PHD_FILE: MSMg01no399_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:36 2005CHROMAT_FILE: MSMg01no399_i24.g1 PHD_FILE: MSMg01no399_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGCGGCGCG
GAANNCAGCNGCATTTGCANCAGCACGCGNGAGNGNGCANGCCNNCNGGG
ACACAGGGAAGGCAGGGGCTGCACCCACAAAGANGACGGAAACNNGGCTC
CAGNGGNNCCCACTAAGAGCCAGCAGGGNGGACACAGGGCACAACCGGCA
ACCANNCGGNCAACCAGCTGAGACNCCCAAGGGAAACACGGAAGAAACGG
CAAATTTTTCAAGTCTGATTTAAATCTGTTTTTCTATGTATAACAGAATT
TCACGGAGACTTCTAAAAGTTTTTTTTTTTTAACACGNGGCCAGACAAAC
CNCNGAGGACNAAAAGCAACCCCCACCCACAAANACGAAAACAACCAAAT
GCCCCACAAACCCCACCCACANGAAAGGGCAGGAAAAAACCCCCCGCCGC
CNNCCAAAAAAAACCCCACCCGGCGNAAACCNNCCNACCGGGGCACGGCC
CCCCCACACCCAACGGCACACACCCACGCGCACAACCAAGCCCACACCAG
CCCCCCCCCAACACGCCCAGGACACGCACCNGANCCCNCCCCGCGCCCAC
AAAAGGGACCCCCAAGAAGCCGNACACCCCAGACCGCCCCCCTTGCCCCC
CCCAGGTTTTTTTTTTATTGGCCGGCTGATTGGAAGGCCCTAAGCTCTGT
TTTCTTCTGCCCTCGAGTC
CCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCAAAGTAGAAGATAAATACATT
CTCCCCACGGATCCTGGCGTCAACTTTGTGAACAATTTTTATATGTCTAA
AATAAAGAGTAAAATGCTGCATTCCTGTCTGTGATAAAATTTGACTGGAA
TTTTCTCTATTTTTCCTTTCCTCTTTCACTTATCTTTTGCTTGGAAAAAA
GTCATAATTGTATAACGGAGCATTTAACAATTGTTTAGAATCATGCCTGG
GAAGTAAATTTTCCTCTATTCCCACATACTAATAATGTCAGTAAATGATT
CCTACCAGTCATGGGGCAGGAAATTAAAATAATTGTGGCCAAGGCTTTAA
TCAAGTCACTACGTACTGTGCATCATCGATTCTAAGAAGACAGATCTCTA
CTCTCCAGAAAAATGACCTCTGTTTCAAAATGATTGACCGATACACACAT
GATTTATGTGTACTCGCTTCTGCCACAGGTTCTAAATTTACTAACCCCTC
ATGAGAAAAGATAAATATTGAACCTTAAACTAACAGACCACCCGATTCTC
CGGTAATGTTACATGTTATCGCTTGAATAACACTATTGCATTTTGCCTAA
GGTCATATCTTAATGATATCACCTCTCTCTTACTGCCCTTAGGTTTCAGA
GCTGTTTTATTTTAATCCGCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_i24.g1 MSMg01no399_i24.g1 CHROMAT_FILE:
MSMg01no399_i24.g1 PHD_FILE: MSMg01no399_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:36 2005
         (259 letters)



>mm_chr5_82158762_82159420
          Length = 659

 Score =  447 bits (231), Expect = e-130
 Identities = 252/259 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaaagtagaagataaatacattctccccacggatcctggcgtcaactttgtgaacaat 60
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 459 atcaaagtagaagataaatacattctccccacagatcctggcgtcaacgttgtgaacaat 400

                                                                       
Query: 61  ttttatatgtctaaaataaagagtaaaatgctgcattcctgtctgtgataaaatttgact 120
           || ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 399 ttctatatgtctaaaataaacagtaaagtgctgcattcctgtctgtgataaaatttgact 340

                                                                       
Query: 121 ggaattttctctatttttcctttcctctttcacttatcttttgcttggaaaaaagtcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggaattttctctatttttcctttcctctttcacttatcttttgcttggaaaaaagtcata 280

                                                                       
Query: 181 attgtataacggagcatttaacaattgtttagaatcatgcctgggaagtaaattttcctc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 attgtataaccgagcatttaacaattgtttagaatcatgcctgggaagtaaattttcctc 220

                              
Query: 241 tattcccacatactaataa 259
           |||||||||| ||||||||
Sbjct: 219 tattcccacagactaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)