BAC Information

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BAC

Clone NameMSMg01-399J09
Chromosome5 (Build37)
Map Location 58,185,154 - 58,185,466
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399J09.T7 (MSMg01no399_j09.b1)MSMg01-399J09.TJ (MSMg01no399_j09.g1)
ACCAG499414AG499415
length746746
length of high quality
(start - end)
635 (68 - 702)314 (75 - 388)
definitionCHROMAT_FILE: MSMg01no399_j09.b1 PHD_FILE: MSMg01no399_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:38 2005CHROMAT_FILE: MSMg01no399_j09.g1 PHD_FILE: MSMg01no399_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGACCGCGGA
ATTCAAGGCTTATCTCTAAACAGGATAAAAGCAATCTACAGCAAACCAGT
AGCCAAAATCAAAGTAAATGGTGAGAAGCTGGAAACAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCACTTTCTTCCTACCTATTCAACATTGTAC
TTAATATCCCAGCCAGAGCAATTTGACAACAAAAGGAGATCAAGGGGATA
CAAACTGGAAAAGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACTCTAAAAATTCCACCAGAGAACTCCTAAGCCTGA
TAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCA
ATGGCCTTTCTTTACCCAAAGGATAAACAGGCTGAGAAAGAAATTAGGGA
AACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGA
CTCTAACTAAGAAAGTGAAAGATCTGTATAAGAACTTCAAGTCTCTGAAG
AAAGAAATTAAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGAT
TGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAACCAATCTACA
GATTCAATGCAATCCCCATCAAAATTTCAACTCAATTCTTCAACGAATTA
TAAAGGGTAATCTGGAAATTCATCTGGAATAACTTAAAACCTAGGN
TCCGATGATGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGGCCTTGGTTTGTGGTCATTTA
CAATTTATAATGTGGCTCATTTGACTACTGCACACATAGTTCCAGCATTT
TTCTTATCATGGAAGTATTTCGCATTGAACGAGTCTTTTTAAAAATGTCA
GTTCTGGATTCAAAATAAAATGGTGTGTGTTTGTTCTATTTGAAAAGGAA
TTATTTTTAATTCTGATGACATCTGACATATCCATCAACAATTACGTTAA
TTTTTTTTTGTTCATTGTCTTCTTGAGAGTAGTACCCCTTGAGAGTACAT
TGGCTTAGGTCACAACATGAAACATCATGCTAATTAAGCTGCTAATTAAA
TGGTAGAAAAAATACACCGCATCAAATAGGCTGCTTGTAGTGCTGTGTTT
TAACTTTCGCGTCATTTCAACTAGTTACCCACTAATTTTGCAATCCTCTA
ATCATGCGCTTTAATCCTAATGTTTATCTCCCATTTTCACCGTCCATGAT
TACTGAGTCTGTCTGGCATACATATATTGTATTTTATCCTTACCTCAAAT
CTGACCTGATGGATGACATATCAGATCCTGTGTCGCCATCCACTTGTTAT
TCATTCAAATGTTTCTGACCTCCATCTATATTTTAATCGCACGCTTCTCT
TATACACAACTTTTTCTGTGTTACTTCATTATTATTTTTTTTGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_j09.g1 MSMg01no399_j09.g1 CHROMAT_FILE:
MSMg01no399_j09.g1 PHD_FILE: MSMg01no399_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:38 2005
         (314 letters)



>mm_chr5_58184954_58185666
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaggccttggtttgtggtcatttacaatttataatgtggctcatttgactactgcaca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 513 ttcaggccttggtttgtggtcatttacaatttataatgtggcttatttgactactgcaca 454

                                                                       
Query: 61  catagttccagcatttttcttatcatggaagtatttcgcattgaacgagtctttttaaaa 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 453 catagttccagcatttttcttatcatggaagtatttcccattgaacgagtctttttaaaa 394

                                                                       
Query: 121 atgtcagttctggattcaaaataaaatggtgtgtgtttgttctatttgaaaaggaattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgtcagttctggattcaaaataaaatggtgtgtgtttgttctatttgaaaaggaattat 334

                                                                       
Query: 181 ttttaattctgatgacatctgacatatccatcaacaattacgttaatttttttttgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 333 ttttaattctgatgacatctgacatatccatcaacaattacgttaatttatttt-gttca 275

                                                                       
Query: 241 ttgtcttcttgagagtagtaccccttgagagtacattggcttaggtcacaacatgaaaca 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgtcttcttgagagaagtaccccttgagagtacattggcttaggtcacaacatgaaaca 215

                         
Query: 301 tcatgctaattaag 314
           ||||||||||||||
Sbjct: 214 tcatgctaattaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)