BAC Information

Click to search

BAC

Clone NameMSMg01-399P04
Chromosome5 (Build37)
Map Location 41,561,726 - 41,561,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399P04.T7 (MSMg01no399_p04.b1)MSMg01-399P04.TJ (MSMg01no399_p04.g1)
ACCAG499688AG499689
length735687
length of high quality
(start - end)
105 (82 - 186)---
definitionCHROMAT_FILE: MSMg01no399_p04.b1 PHD_FILE: MSMg01no399_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:05 2005CHROMAT_FILE: MSMg01no399_p04.g1 PHD_FILE: MSMg01no399_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTGGCCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGA
GGATCCGCGGAATTCAAGGTTTACTCAAATGTAGCCACTAAGCCCAAGTC
ATTTCGGCATAGACACCGCACACCCAATTCTTCAACTATTTGTTTCCTTT
TCCTCTCAACTCTGTCAATTATCTTATGTTCCTGAATAATTTATGGTCCT
TAAAAGGGAGTCTAGGCCTGCAGAGTCTTTCAGGTCTGGCCAGACATAGC
CATGGTGTTGTATAAACCCACACTTCAGGCAAAGTAATATCTTAATTACT
TTTTGTGGATGCAGACTGCCAACCTTTCTTCCTCAACGTCCTTTTTGTGA
ACTTGTAATTTTAGAGTGTATATGCTAATCTAGATGCTACGTAGAACTGC
ACTTGCAAGTATTCTAATCCCTTCCCACCACTCGTCTTATATATTTTTCC
TTCCTTACATCATCTCTAGTACAATGATTATTATGTAAATTACAGTCACT
TTTGTTATCTATCCTTTTCCTCTTTTTTCATCTAACTTTCCTTGCTCTGC
TCTATTACTCCACCTACTCTCCTTCTCTCAATGTATCCTACTTTTCCGAT
AATCTCTTTTCTCTATCTTTTCTCTCTTTCTCCTTTCCCATATATTCCCT
TTTTCTTACCCTTATTGTCCTATAATACCTCCCCTCTCTCCCCGCTTATT
TTTTTATTCTTTCCTAACCTCGTTATTTTTTCATT
TTTCTTTTCGATGATAGGGAGGCTGGGGCGCCGTCCGAGCAGTAGGGAAC
TATTTATTCCACAAGGAATCCTATCACCTGGAGCAGCNNGGNNNNTGGAC
GGCATCTCAACAAACACACAAAACTGGGGAAGTAAATCTAATCATCACCT
ATCCGCTTCCTAGCCACCTCCTCCTCATTTCGATCTCCCTTCCAGTACGC
ACTTCAGCGGTTTTGTATAAACACACCCCCGGGTTCCTTTAATCCAGGTC
AAAGGTTGGTTTAAATTGGAATTGGCCTCCCCTTCTAAAATCGGAAAAGG
TTTGTGTACAAGGTGGGAAAGATCGGTTCGTGGTTTAAATGCCCCCCTTG
TTGGGGACGGGTTTGAAGAACCCTCGGGTTCCAATACTAAACTGGGACCT
GTCTCCACCGCTAGTAAAGGGGGCGCCTCATACTTTTTTTTTTTTTTTTT
TACTCCCCCCCCTCCGTATTTTTTATCCCCACCCTCCATCTCCCCTCCTT
TTTTTTACCCCACCCCCTCCTCTTTCCCCTCTCTTGTTTCCTAGTCCCAA
ACTATCATACACCTTCTTTTTCGCCTCCCCCCCCCCTCCTTTTTTTTCCC
ACACCTGCCCCTAGAAGTTTGTATGTTCTTCTCCCCTACCTCACCATTTA
GCCGTGTTCTATCGAGCCGTCACTGCCGCCTCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_p04.b1 MSMg01no399_p04.b1 CHROMAT_FILE:
MSMg01no399_p04.b1 PHD_FILE: MSMg01no399_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:05 2005
         (105 letters)



>mm_chr5_41561526_41562030
          Length = 505

 Score =  188 bits (97), Expect = 1e-52
 Identities = 103/105 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagccactaagcccaagtcatttcggcatagacaccgcacacccaattcttcaactattt 60
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 305 tagccactaagcccaagtcatttcagcatagacaccacacacccaattcttcaactattt 246

                                                        
Query: 61  gtttccttttcctctcaactctgtcaattatcttatgttcctgaa 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtttccttttcctctcaactctgtcaattatcttatgttcctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)