BAC Information

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BAC

Clone NameMSMg01-400A06
Chromosome5 (Build37)
Map Location 81,293,694 - 81,294,220
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400A06.T7 (MSMg01no400_a06.b1)MSMg01-400A06.TJ (MSMg01no400_a06.g1)
ACCAG499738AG499739
length783791
length of high quality
(start - end)
534 (43 - 576)421 (72 - 492)
definitionCHROMAT_FILE: MSMg01no400_a06.b1 PHD_FILE: MSMg01no400_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:10 2005CHROMAT_FILE: MSMg01no400_a06.g1 PHD_FILE: MSMg01no400_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGTTAATTGAGAGCCCTTTCTTTAAAAATGGTAAGCAATGCTGCCT
GAAGAATAAAACCTGAGACTGTTCTCTACTTACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACCTCCTAA
AATAAATAAGCCAAATGATACCCAGTGTTCTCTTATACTTCATCTTCTCT
GCTACCTTCATCCTTATTTCCCTAGTAAATTGGAACATTTCTCTTTTAAG
AACCAAATAGCTATGTTTAGCATATAAATGTACAATTATAACTTTTTTCA
TTTCTTCTGTGCAAAAAAATATCTAGTGACCACTGGTGATATTCTACCTT
CATATTTATTTGTATTTTAGTGTTCTGTTTTATTTTAGAGCTTTTATAGG
AGTCACAAAACTTTATAGACTAAATATATATCGTAAAGCAAGAAATTTCT
AACTTAATTTGTGTGTAATTAAACTTTTCTTGTTCTATGAATTTTGTAAG
AAGGGCTCTATTAAGTCAAGTCTGGTGTAGGATGTATTTTAAATTAAAAA
TTCAGTGTACATTTTCCACTCTTAGTTTCAATCTCAAGGACTCTCTTTCC
CTAAGTTGGGAGATAAAAATGTTTATAGAGTATACATTTACTGAGCAATA
GTAATTGTCTGACCTCTGTATGTGCACTGTGGCCTGGGGAATTGTGAGNT
NTTCCTCCNCCCATATTTGATGAACCTATCAAN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTCTGGTCCAATCTGTTTGGCATTCCG
TGGGCTTCTTGTACATTTATGGACATCTCTTTTTTTAGGTTAGGGAAATT
TTCTTGTAAAATTTTGTTGAAGATATTTACTGTCACTTTGAGTTGGGAAT
CTTTGATCTCTTCTATACCTATTATCCTTAGGTTTGGTCTTCTCATTGTG
TTCTGGAGTTCTTAGATGTTTGAGTTAGCGGTGTTATGCTTTTTGTATTT
TCTTTGACTGTTGTGAAAGTGTCTTCTATGGTATCTTCTGCACCTGAGAT
TCTCGATTCTAGCTCTGGTATTCTGTTGCTGATGCTTACATTTGTGAATC
CTATTCTCTTTCCTAGTTTTCTGCCTCCATGATTGTCTCCCTTTGTGTTT
TCTTTAATGTGTTTGTTTCCATTTCTAGATCCTAGATAGTTTTGGTCAGT
TCCTTCACCCTATTAGATGTGCGTTTGTGGATTTCTTTAGAAAATGTATG
GGGTGGCTCCATAAGGGGAGCTACTTGATTACCTGTGGTCCTCTGAATTT
TTTTGAAGGAGTTAGTTATCGCCCGTTCGAGGTTCCCTACGACGCTCTTG
AATCGGGAATTTACGATTGAGTCCTGGTGTTCGCGCTTCGGTGTGGGTAT
ACCTGGGTGTGACGCTTGTGTTAATTGTGGGTATATAATACTCCGTCTCC
TCTGGGGGGACAATTCGTGTATAAATTATTTAATTGTCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_a06.b1 MSMg01no400_a06.b1 CHROMAT_FILE:
MSMg01no400_a06.b1 PHD_FILE: MSMg01no400_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:10 2005
         (534 letters)



>mm_chr5_81293343_81294275
          Length = 933

 Score =  967 bits (500), Expect = 0.0
 Identities = 522/530 (98%), Gaps = 3/530 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggttaattgagagccctttctttaaaaatggtaagcaatgctgcctgaagaa 64
           ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||
Sbjct: 878 gaattccaggttaattgagagccctttctttaacaatgacaagcaatgctgcctgaagaa 819

                                                                       
Query: 65  taaaacctgagactgttctctacttacacacacacacacacacacacacacacacacaca 124
           |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 818 taaaacctgagactgttctctactt--acacacacacatacacacacacacacacacaca 761

                                                                       
Query: 125 cacacacacacacacacacacacacacctcctaaaataaataagccaaatgatacccagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cacacacacacacacacacacacacacctcctaaaataaataagccaaatgatacccagt 701

                                                                       
Query: 185 gttctcttatacttcatcttctctgctaccttcatccttatttccctagtaaattggaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gttctcttatacttcatcttctctgctaccttcatccttatttccctagtaaattggaac 641

                                                                       
Query: 245 atttctcttttaagaaccaaatagctatgtttagcatataaatgtacaattataactttt 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atttctcttttaagaaccaaacagctatgtttagcatataaatgtacaattataactttt 581

                                                                       
Query: 305 ttcatttcttctgtgcaaaaaaatatctagtgaccactggtgatattctaccttcatatt 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttcatttcttctgtgcaaaaaaa-atctagtgaccactggtgatattctaccttcatatt 522

                                                                       
Query: 365 tatttgtattttagtgttctgttttattttagagcttttataggagtcacaaaactttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatttgtattttagtgttctgttttattttagagcttttataggagtcacaaaactttat 462

                                                                       
Query: 425 agactaaatatatatcgtaaagcaagaaatttctaacttaatttgtgtgtaattaaactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agactaaatatatatcgtaaagcaagaaatttctaacttaatttgtgtgtaattaaactt 402

                                                             
Query: 485 ttcttgttctatgaattttgtaagaagggctctattaagtcaagtctggt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttcttgttctatgaattttgtaagaagggctctattaagtcaagtctggt 352



 Score = 99.3 bits (51), Expect = 6e-25
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                              
Query: 88  ttacacacacacacacacacacacacacacacacacacacacacacacaca 138
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttacacacacacacacacacacacacacacacacacacacacacacacaca 227



 Score = 95.5 bits (49), Expect = 9e-24
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 92  acacacacacacacacacacacacacacacacacacacacacacacaca 140
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acacacacacacacacacacacacacacacacacacacacacacacaca 227



 Score = 95.5 bits (49), Expect = 9e-24
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 94  acacacacacacacacacacacacacacacacacacacacacacacaca 142
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acacacacacacacacacacacacacacacacacacacacacacacaca 227



 Score = 95.5 bits (49), Expect = 9e-24
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 96  acacacacacacacacacacacacacacacacacacacacacacacaca 144
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acacacacacacacacacacacacacacacacacacacacacacacaca 227



 Score = 95.5 bits (49), Expect = 9e-24
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 98  acacacacacacacacacacacacacacacacacacacacacacacaca 146
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acacacacacacacacacacacacacacacacacacacacacacacaca 227



 Score = 95.5 bits (49), Expect = 9e-24
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 100 acacacacacacacacacacacacacacacacacacacacacacacaca 148
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acacacacacacacacacacacacacacacacacacacacacacacaca 227



 Score = 95.5 bits (49), Expect = 9e-24
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 102 acacacacacacacacacacacacacacacacacacacacacacacaca 150
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acacacacacacacacacacacacacacacacacacacacacacacaca 227



 Score = 93.5 bits (48), Expect = 3e-23
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                           
Query: 104 acacacacacacacacacacacacacacacacacacacacacacacac 151
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acacacacacacacacacacacacacacacacacacacacacacacac 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 58
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 15
Length of query: 534
Length of database: 933
Length adjustment: 10
Effective length of query: 524
Effective length of database: 923
Effective search space:   483652
Effective search space used:   483652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)