Query= MSMg01no400_b23.b1 MSMg01no400_b23.b1 CHROMAT_FILE:
MSMg01no400_b23.b1 PHD_FILE: MSMg01no400_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:19 2005
(493 letters)
>mm_chr5_65097171_65098063
Length = 893
Score = 909 bits (470), Expect = 0.0
Identities = 488/494 (98%), Gaps = 2/494 (0%)
Strand = Plus / Minus
Query: 1 aatctgattgtcttgtagtagcgatcccaggaaaacaagctgcccttgacagtctcccag 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 568 aatctgatagtcttgtagtagcgatcccaggaaaacaagct-cccttgacagtctcccag 510
Query: 61 gagctgtagggcttccccgaagcttcctcggcctctctgcatgcagcacgaggctgcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gagctgtagggcttccccgaagcttcctcggcctctctgcatgcagcacgaggctgcctt 450
Query: 121 cctgttcaggtgcccgtgaagccgcagacttgaattttggaactttgaaggagagcgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctgttcaggtgcccgtgaagccgcagacttgaattttggaactttgaaggagagcgcat 390
Query: 181 agggcgtcatacgtgaagaaccatctaacacatggctcatgggcacggaggctggtggaa 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 389 agggcgtcatacgtgaagaaccatctaacacatggctcgtgggcacggaggctggtggaa 330
Query: 241 tcttagattcatttcttcactcggggagtatgccttact-ccctgcgccaacccctagct 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 tcttagattcatttcttcactcggggagtatgccttactcccctgcgccaacccctagct 270
Query: 300 tcacaataccccttgatattgaaccacatttccaaccttcagacaaaggcttttgaatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcacaataccccttgatattgaaccacatttccaaccttcagacaaaggcttttgaatat 210
Query: 360 gaatattcaggttggagagatggctcagcggttaagagcactgactgctcttccagagag 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 209 gaatattcaggttggagagatggctcagaggttaagagcactgactgctcttccagaaag 150
Query: 420 gtcctgagttcaactcccagcaaccacatgatggctcacaaccatctgtaatgggatctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gtcctgagttcaactcccagcaaccacatgatggctcacaaccatctgtaatgggatctg 90
Query: 480 atgccttcttctgg 493
||||||||||||||
Sbjct: 89 atgccttcttctgg 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_b23.g1 MSMg01no400_b23.g1 CHROMAT_FILE:
MSMg01no400_b23.g1 PHD_FILE: MSMg01no400_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:19 2005
(436 letters)
>mm_chr5_64927877_64928712
Length = 836
Score = 820 bits (424), Expect = 0.0
Identities = 433/436 (99%)
Strand = Plus / Plus
Query: 1 agtaggactcctgccaacagaaccaggaacactaagaaatagtccaggctgagggagcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaggactcctgccaacagaaccaggaacactaagaaatagtccaggctgagggagccg 260
Query: 61 cgggggagggggtgcacatcttgttacatttcatagccttgcctatgatctggagatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggggagggggtgcacatcttgttacatttcatagccttgcctatgatctggagatcag 320
Query: 121 ccgtcagctgttgctcaaccctcccatttccaactgctcctccactgttgtcttgcgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgtcagctgttgctcaaccctcccatttccaactgctcctccactgttgtcttgcgagg 380
Query: 181 ctggggttgatggatggatttataatgagcgctgtagatagccccgaggacaacgcttcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggggttgatggatggatttataatgagcgctgtagatagccccgaggacaacgcttcg 440
Query: 241 caagaagggaaaggaaacaggtggcagccaaatattttgcaatctacaagtattcctaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagaagggaaaggaaacaggtggcagccaaatattttgcaatctacaagtattcctaaa 500
Query: 301 atatgggtgttctatcccagttgtcagctttaagaagcacaaacgctacgagctgtggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgggtgttctatcccagttgtcagctttaagaagcacaaacgctacgagctgtggac 560
Query: 361 ttccagagttaactgttgaagtgaaattcactttcaggaagaaagaaaggttgatcttat 420
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 tttcagagttaactgttgaagtgaaattcactttcagggagaaagaaaggttgatcttat 620
Query: 421 tccttcttcgctggag 436
||||||||||||||||
Sbjct: 621 tccttcttcgctggag 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
