BAC Information

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BAC

Clone NameMSMg01-400D08
Chromosome5 (Build37)
Map Location 92,047,472 - 92,047,994
singlet/doubletsinglet
Overlap gene9130213B05Rik
Upstream geneRassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400D08.T7 (MSMg01no400_d08.b1)MSMg01-400D08.TJ (MSMg01no400_d08.g1)
ACCAG499886AG499887
length776798
length of high quality
(start - end)		533 (45 - 577)456 (74 - 529)
definitionCHROMAT_FILE: MSMg01no400_d08.b1 PHD_FILE: MSMg01no400_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:26 2005CHROMAT_FILE: MSMg01no400_d08.g1 PHD_FILE: MSMg01no400_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCCCCATTCCTCTCCTCTGCCAGAGGAGACCTCACTTTTCAATCA
TTAGTGCTTATCACAGCTGAGCAGGAAGGAAACACAGATATTAAGACCGG
ACTTAGTTCAGGGGAGAGTGCTGCAGTCATTAGCTGTTAGTAATTAAGCA
TCAGACTCTTATCTTCCATTAGCAAATATGTCCATGAGACTGTCCCTCTG
TCCTCTTTCTGTTTCTACCAGTGGCTCCCTGTTGCTAATTGTTCTATCTT
TGCCTAGCTCCCTTCACTGAAAAATTAGTCTAAGGGACCCGGTTTGGGAA
ACCAGGGGACACCGTGACCAACTGAATACACTCAGATGCCTGTCCTTCGG
GACTTTACATTCTGGGATGCCGGCACAATAGCCACGTTACAAGGTAGGTG
GTAGTAAGGTAATTCCCCCCCCCATGTATGGGGAAATTAAAGACAGGCAT
GAGGAATCCCCAGTGGGAGGTGAGGATTTCAGTTCTGAACAGTGCCCAGA
GAAGGTCTCATGAAGGTATCACTTAGCGGACTCCTGGGAGGTCAGGGATG
AGTCTTGTGGATCGTCTGGAACACATTCTAAAGACCGAGGTGGCAATGAG
GGCCAAAGTCTTAAAGCCGGGACTCTGTGTGGGGTCTACCAGGTCCCTAA
TACCATAAAAACACCTTTTCTGGGTGGATGTTTCTCCCCGGGAAAGGTGC
GGGGATATCTGGACGGGGATCCCCCG

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAATATTGTACATAGTACTACCAGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTANAAAGAATGAATTT
ATGAAATTCCTAGNCAAATGGATGGACCTGGGAGGCATCATCCTGAGTGA
GGTAAAACATTTCACAAGAAACTCACACAATATGTACTCCCCTGATTAAG
TGGATATTAGCCCCCAACCCTAAGATACCCCAGGATTTAAGATATAATTT
TGTAAAACCCATTGAACCTCTAGAATAAATGACGAATGGAGGGGGGGGGA
CCTTAGGCCCCCTCCTTAATATGTGGGGGAAAAAAACCCCCGCTGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_d08.b1 MSMg01no400_d08.b1 CHROMAT_FILE:
MSMg01no400_d08.b1 PHD_FILE: MSMg01no400_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:26 2005
         (533 letters)



>mm_chr5_92047268_92048205
          Length = 938

 Score =  938 bits (485), Expect = 0.0
 Identities = 512/523 (97%), Gaps = 5/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccccattcctctcctctgccagaggagacctcacttttcaatcattagtgct 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattcacccccagtcctctcctctgccagaggagacctcacttttcaatcattagtgct 668

                                                                       
Query: 65  tatcacagctgagcaggaaggaaacacagatattaagaccggacttagttcaggggagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatcacagctgagcaggaaggaaacacagatattaagaccggacttagttcaggggagag 608

                                                                       
Query: 125 tgctgcagtcattagctgttagtaattaagcatcagactcttatcttccattagcaaata 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 607 tgctgcagtcattagctgttagtaattaagcatcagactcttatcttccattagcaaaga 548

                                                                       
Query: 185 tgtccatgagactgtccctctgtcctctttctgtttctaccagtggctccctgttgctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgtccatgagactgtccctctgtcctctttctgtttctaccagtggctccctgttgctaa 488

                                                                       
Query: 245 ttgttctatctttgcctagctcccttcactgaaaaattagtctaagggacccggtttggg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 487 ttgttctatctttgcctagctcccttcactgaaaaattagtctaagggaccctgtttggg 428

                                                                       
Query: 305 aaaccaggggacaccgtgaccaactgaatacactcagatgcctgtccttcgggactttac 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 427 aaaccaggggacaccgttaccaactgaatacactcagatgcctgtccttagggactttac 368

                                                                       
Query: 365 attctgggatgccggcacaatagccacgttacaaggtaggtggtagtaaggtaattccc- 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 367 attctgggatgccggcacaatagccacgttacaaggtaggtggtagtaaggtaattcccc 308

                                                                       
Query: 424 ---ccccccatgtat-ggggaaattaaagacaggcatgaggaatccccagtgggaggtga 479
              |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 307 ccaccccccatgtatgggggaaattaaagaaaggcatgaggaatccccagtgggaggtga 248

                                                      
Query: 480 ggatttcagttctgaacagtgcccagagaaggtctcatgaagg 522
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggatttcagttctgaacagtgcccagagaaggtctcatgaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 938
Length adjustment: 10
Effective length of query: 523
Effective length of database: 928
Effective search space:   485344
Effective search space used:   485344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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