Query= MSMg01no400_d10.b1 MSMg01no400_d10.b1 CHROMAT_FILE:
MSMg01no400_d10.b1 PHD_FILE: MSMg01no400_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:27 2005
(532 letters)
>mm_chr5_67146201_67147132
Length = 932
Score = 868 bits (449), Expect = 0.0
Identities = 517/555 (93%), Gaps = 28/555 (5%)
Strand = Plus / Plus
Query: 1 ttcatagtgaaggtaaaatttaagccaagaacattggcaaggttctaagcaggggtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttcatagtgaaggtaaaatttaagccaagaacattggcaaggttctaagcaggggtgtta 242
Query: 61 gattgctgctgatttgtggcttttactatgatttcttttcatctggaactatagctaagt 120
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 243 gattgctgctgatttgtggcttctactatgatttcttttcatttggaactatagctaagt 302
Query: 121 gagagagctcttgtctagggtgagggaggtcctggttaaacctccagtactagcacacac 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 303 gagagagctcttgtctagggtgagggaggttctggttaaacctccagtactaacacacac 362
Query: 181 acta-acacacacacacacacacacgtacgcatgcat----------------------g 217
|| | |||||||||||||||||||| || || || |
Sbjct: 363 ac-acacacacacacacacacacac--acaca--cacacacacacaaacacacacacacg 417
Query: 218 cacaatcttaaagttctacaagtagggtgaaggtctgtgtgtggagaggggcagggaacg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cacaatcttaaagttctacaagtagggtgaaggtctgtgtgtggagaggggcagggaacg 477
Query: 278 aggagttgttgaatatgcttgtacgtttcctttcccttccttccttttgactgtgtactg 337
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aggagttgctgaatatgcttgtacgtttcctttcccttccttccttttgactgtgtactg 537
Query: 338 aacaccaggcacagactctgccactgagctgtggccgtggcctccacgagcacattcagg 397
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agcaccaggcacagactctgccactgagctgtggccgtggcctccacgagcacattcagg 597
Query: 398 ggctacttactcatcgccatcaaccagacccttttatccaagtcacagaaaaggctagaa 457
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 598 ggctacttactcatcgccatcaaccagacccctttatccaagtcacagaaaaggctagaa 657
Query: 458 ttcgttttctaggagaaatgtcagagatgaccttgagatttacacttcaggattcaggga 517
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tttgttttctaggagaaatgtcagagatgaccttgagatttacacttcaggattcaggga 717
Query: 518 ttaaaactctagggt 532
|||||||||||||||
Sbjct: 718 ttaaaactctagggt 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_d10.g1 MSMg01no400_d10.g1 CHROMAT_FILE:
MSMg01no400_d10.g1 PHD_FILE: MSMg01no400_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:27 2005
(245 letters)
>mm_chr5_67325100_67325744
Length = 645
Score = 458 bits (237), Expect = e-133
Identities = 243/245 (99%)
Strand = Plus / Minus
Query: 1 ctcttggaatctcttttgaatctcaggcgatcagtaagtgtgcttcccaatttgctagta 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcttggaagctcttttgaatctcaggcgatcagtaagtgtgcttcccaatttgctagta 386
Query: 61 gctaaagctttttccattgcttctcttaattttgatccccactgcgtcctaaccagagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctaaagctttttccattgcttctcttaattttgatccccactgcgtcctaaccagagca 326
Query: 121 ttgccttttgggccactccctttttctctgtcctttattgaatttctttgccatcaagct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgccttttgggccactccctttttctctgtcctttattgaatttctttgccatcaagca 266
Query: 181 caagatcagtgggaagaagttgctggtacggacatttaacaatctatttttatgtttcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagatcagtgggaagaagttgctggtacggacatttaacaatctatttttatgtttcta 206
Query: 241 tttac 245
|||||
Sbjct: 205 tttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
