Query= MSMg01no400_i18.b1 MSMg01no400_i18.b1 CHROMAT_FILE:
MSMg01no400_i18.b1 PHD_FILE: MSMg01no400_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:53 2005
(475 letters)
>mm_chr5_55512461_55513335
Length = 875
Score = 907 bits (469), Expect = 0.0
Identities = 472/473 (99%)
Strand = Plus / Minus
Query: 1 ggttgggtacacctgtgagggactttccttaattagataggtatattgacaataagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggttgggtacacctgtgagggactttccttaattagataggtatattgacaataagttca 414
Query: 61 cagctacctctgacagcctacaataagaaaaaatgttagagatcccattcactgaatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagctacctctgacagcctacaataagaaaaaatgttagagatcccattcactgaatttc 354
Query: 121 accctaaggcaacaataggaagaaggggaatagaacagtaggaagaacagggaaataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 accctaaggcaacaataggaagaaggggaatagaacagtaggaagaacagggaaataaaa 294
Query: 181 gcttgttctctttttaattacttattcttgctttagatgtcattagcaaatccaggccat 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 293 gcttgttctctttttaattacttattcttgctttagatgtcattagcaagtccaggccat 234
Query: 241 cacacttattagaacctatttcttcagaattctgggatatattatgactaactaggacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cacacttattagaacctatttcttcagaattctgggatatattatgactaactaggacct 174
Query: 301 tgtagactgaaaaattactagattctcaaatattttattggaagacatccaatgttctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgtagactgaaaaattactagattctcaaatattttattggaagacatccaatgttctac 114
Query: 361 tagcttgactagatatatatgtatgagatttgttaaaatggcttacaggctgtggtccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tagcttgactagatatatatgtatgagatttgttaaaatggcttacaggctgtggtccag 54
Query: 421 cctgtgaaacaatgcttgtctttaattaaaatttatgtgtgtgcgtatatgtg 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cctgtgaaacaatgcttgtctttaattaaaatttatgtgtgtgcgtatatgtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_i18.g1 MSMg01no400_i18.g1 CHROMAT_FILE:
MSMg01no400_i18.g1 PHD_FILE: MSMg01no400_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:53 2005
(414 letters)
>mm_chr5_55316013_55316827
Length = 815
Score = 702 bits (363), Expect = 0.0
Identities = 402/415 (96%), Gaps = 1/415 (0%)
Strand = Plus / Plus
Query: 1 tatggaatgatgtcatgattgttttgagtagttgtgcatgatagctactatctgaaatct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tatggaatgatgtcatgattgttttgagtagttgtgcatgatagctacgatctgaaatct 260
Query: 61 atcattgtgggctgagtagatgatgtgcctgtatcttattgggggaaaagctctgaatag 120
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 261 atcattgtgagctgagtagatgatgtgcctgcatcctattgggggaaaagctctgaatag 320
Query: 121 ctaatggagttcttcacttacaaaaactgaagcttagcttatttgaatgatctagttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaatggagttcttcacttacaaaaactgaagcttagcttatttgaatgatctagttttt 380
Query: 181 actgaatattatgcattaaa-tttttcttctaaaatcagatattgtagtcctaatacagt 239
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 actgaatattatgtattaaattttttcttctaaaatcaaatattgtagtcctaatacagt 440
Query: 240 atctcagatattacttggaaatcaggtgttttatgaatagatgagctgaaatatacattt 299
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 441 atctcagataatacttggaaatccggtgttttatgaatagatgagctgaaatatatattt 500
Query: 300 tcctaaagccacctgagaaattactggtccttaatacaatttcactgatggtattaaaag 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctaaagccacctgagaagttactggtccttaatacaatttcactgatggtattaaaag 560
Query: 360 aaaactcacatcaagacatagattaaatgtcacattgacacaaaaatggaggaat 414
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 561 aaaactcacatcaagacatagattaaatgacacattgacagaaaaatggaggaat 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 815
Length adjustment: 9
Effective length of query: 405
Effective length of database: 806
Effective search space: 326430
Effective search space used: 326430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
