Query= MSMg01no400_n08.b1 MSMg01no400_n08.b1 CHROMAT_FILE:
MSMg01no400_n08.b1 PHD_FILE: MSMg01no400_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:16 2005
(540 letters)
>mm_chr5_119172766_119173706
Length = 941
Score = 967 bits (500), Expect = 0.0
Identities = 527/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 6 gaattcattggca-tctcctgtctggaactgcttgccttactcccaatgtgagctccctg 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattcattggcacactggtgtctggaactgcttgccttactcccaatgtgagctccctg 682
Query: 65 agcttagcattaaatcacggaaaggggttgtctccaagtgatgtttgcctcaagtgtgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcttagcattaaatcacggaaaggggttgtctccaagtgatgtttgcctcaagtgtgtc 622
Query: 125 cagtacctattctttctggccacacccactgtgatggtacgtgttgacagaagctcttac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtacctattctttctggccacacccactgtgatggtacgtgttgacagaagctcttac 562
Query: 185 cattcccatttcagacactggccagtctaaaggcaatgtctagttaactccatggctctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattcccatttcagacactggccagtctaaaggcaatgtctagttaactccatggctctc 502
Query: 245 tcttatttgacttaataaatatactatcatataaacttttactgacaaaaatttaaaata 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tcttatttgacttaataaatatactatcatataaactaaaactgacaaaaatttaaaata 442
Query: 305 ttcaaaatactgacagatagggtctttgatgattactacaaaaaataaagaagtattttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaaatactgacagatagggtctttgatgattactacaaaaaataaagaagtattttc 382
Query: 365 ttttccaatttacttataataaaaatcaatcaatggcaaactgtttctggaagagacacg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttccaatttacttataataaaaatcaatcaatggcaaactgtttctggaagagacacg 322
Query: 425 tcaacgacctgctctgggcaagaacgatctgacccataaatggtgcacataaaacactct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaacgacctgctctgggcaagaacgatctgacccataaatggtgcacataaaacactct 262
Query: 485 cacctaatctacgcccagcttcctgacaccataagcgtctctgaactacggacacc 540
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cacctaatctacacccagcttcctgacaccgtaagcgtctctgaactacggacacc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_n08.g1 MSMg01no400_n08.g1 CHROMAT_FILE:
MSMg01no400_n08.g1 PHD_FILE: MSMg01no400_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:16 2005
(249 letters)
>mm_chr5_118987111_118987759
Length = 649
Score = 466 bits (241), Expect = e-136
Identities = 247/249 (99%)
Strand = Plus / Plus
Query: 1 agtaggtagcccaggctagcttagaatttgaggcactagtccctgcctcaatgttggttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaggtagcccaggctagcttagaatttgaggcactagtccctgcctcaatgttggttc 260
Query: 61 acacccacagcctctcctgaagtggcaagatgtcatcagttcatttattcatgttccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 acacccacagcctctcctgaagtggcaagatgtcatcagttcatttattcacgttccctt 320
Query: 121 ccttttcccttgatcatcttaacttgtcttttggtgccagcggtgttgggagctgtttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttttcccttgatcatcttaacttgtcttttggtgccagcggtgttgggagctgtttct 380
Query: 181 gacttcttctggctacacagactactttcacagacagtagggctgtgccctgagaactta 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttcttctggctacacagactaccttcacagacagtagggctgtgccctgagaactta 440
Query: 241 ctgcttcca 249
|||||||||
Sbjct: 441 ctgcttcca 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
