Query= MSMg01no401_e10.b1 MSMg01no401_e10.b1 CHROMAT_FILE:
MSMg01no401_e10.b1 PHD_FILE: MSMg01no401_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:52 2005
(467 letters)
>mm_chr5_121945130_121945996
Length = 867
Score = 806 bits (417), Expect = 0.0
Identities = 447/469 (95%), Gaps = 21/469 (4%)
Strand = Plus / Plus
Query: 1 tgctccttcagagatatacagccgctttccatctaagagactcgttactttgacaagtac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tgctccttcagagatatacagccgctttccatctaagagactcgttactttgacaag--- 274
Query: 61 tagatctcctgaagaaaaaataaatctcaggttcatatgtatgtgcgtcatttgcaagct 120
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 --------------aaaaaataaatctcaggttcatatgtatgtgcgtcatttgcaagct 320
Query: 121 ctctgctccacaatgacaagaaaggtaggaaatcatgcagcaacttgtagttgtgtggct 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgctccacaatggcaagaaaggtaggaaatcatgcagcaacttgtagttgtgtggct 380
Query: 181 acacctattgcagtaaggtggcatggaggcctgagactgcccacacagccagatcttgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacctattgcagtaaggtggcatggaggcctgagactgcccacacagccagatcttgtc 440
Query: 241 acacactnct--ttcttaatggtttagtgcttttcatctagtttaatagaacagttgttg 298
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacac--ctcattcttaatggtttagtgcttttcatctagtttaatagaacagttgttg 498
Query: 299 ttgttgttgttgttttttgttttgttttgttttttggtttttcgagacaaggtttctctg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgttgttgttgttttttgttttgttttgttttttggtttttcgagacaaggtttctctg 558
Query: 359 tgtagccctggctgtcctggaactcactctgtagaccaggctggcctcaatctcacagtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtagccctggctgtcctggaactcactctgtagaccaggctggcctcaatctcacagtg 618
Query: 419 atctgcctgcctctgcctcccaaatgctgggattaaaggcgtgcgccac 467
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atctgcctgcctctgcctcccaaatgctgggattaaaggcgtgcgccac 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_e10.g1 MSMg01no401_e10.g1 CHROMAT_FILE:
MSMg01no401_e10.g1 PHD_FILE: MSMg01no401_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:52 2005
(245 letters)
>mm_chr5_122080016_122080660
Length = 645
Score = 412 bits (213), Expect = e-119
Identities = 232/239 (97%), Gaps = 2/239 (0%)
Strand = Plus / Minus
Query: 7 agggg--ccacctaggggtgtgggctgtgggggcttctagttcagggtccttaaactcag 64
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aggggaaccacctaggagtgtgggctgtgggggcttctagttcagggtccttaaactcag 391
Query: 65 aggagggtgtgagattaaacttcagtgtgtgtctggcccttctgaggggagaggaaaggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 390 aggagggtgtgagattaaacttcagtgtgtgtctggcccttctgaggggagaggaaacgc 331
Query: 125 tttcatgagttgtcagagtgtagtgatatgaaatagatcctgccttgcctcttcctagag 184
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 330 tttcatgagttgtcagagtgtcgtgatatggaatagatcctgccttgcctcttccaagag 271
Query: 185 gtcggagatgtgggggacacaaatgagtttcttctcctcagatatttaattgctctgcc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtcggagatgtgggggacacaaatgagtttcttctcctcagatatttaattgctctgcc 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
