NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCGGTCTTTTCCCAGGACTAATGTGCTATAAGACAGTTTTTCT
GTTAAAAAGTAATTATATATAAAAAAGTAATTATGTCAGGGCTAGACAGA
TGGCTCCCCAGTTAATAATACTTGCTGCTCTTGGAAAGGACACAAAATCA
GTTTCTAGCACCTAACATCCAGAACTCCAGGTCTAGGAAATCTGACAACT
CCTTCGGGCCTTTGTGAGTACATAGAGCACATACATATATGCAGGCAAAC
ATTTGCACACATAAAATAGAAAAATATGAAAATGTAATACTAACAACAAG
ACAGACGGTCTGATGGGGGTTTACATGAAGGGAAAGGTAGCACTTTGGGG
TTTTCCAGGGCTATGCTTTCCTTTATGTGGGATCCACTAAGCCAAGAACA
CAGCAACCTGGAAAGCCTGTACATTAGGAAAACACAGCCCTGCACTAATT
GTGTAGTCAGTAAACAATACGGCGGTATATTTGTTACTCAACATGTGTTC
TTGTGATGAGACCTGAAGCAAGACTCTTTCTAAACAATTAACGTTGAGCA
TCGTTTGAATATTCACCATGTTATTTCAAATTCTCTTCTGAAAGTNATAG
TTCCTGATTGGATATATGCCACTAAAATGGTAATTTTAGAGCCCTTGAAA
CCAGTGCATGAGGTATTTTAATTGTGAAAAAAAATCACGAAAAGCATCAT
CCCT

TTTCGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAAACAACCAGATTCAGTA
GGCCCTTCCATCCCAACAGTAAGCAATAATGATGCTAGAGAGTTTCTTTC
AGATAAACTAAAATTTCAAAGAACACTCTGAAAACAGACTAGCTGCCCAG
AGGAAGCAGAAACCAACTGAGCTACCCTGGACAAGGTTAAGACCGACTGA
GACTCTTAGAAAAACAGGAATCTACCATCACCAAGGAAGAAAGAAGTTTC
TGACCATAGGAGAAACCAGAATAGATACTTAGAACTATAGCTGATTTACA
CCCAAATACAGGAATTTACAATGGTTTAGGAAGTAGATCAGGCTGTGGTT
TTAGAGTATTGGATTATTCATGAGATGGTTAGCTAGAAGGGAACTCCCTA
GTTAGAACCATGGCTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAAAGA
TCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGCTGACTT
TGTCTCAGTCATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTTTCATT
CCTCTGTTCTGTGTAATAGTCATTAAGCATCCGGTTACCTCATTTGTTCC
TTGCGGGTATGTCACCCCACTTTCTTAATGCCTTCTGTATAAGAAAGCTG
ATGCTCACTTTGACCAAATACATTCTGATACTACTCCAATCTCCAAAAAT
AAAA

Query= MSMg01no401_h01.b1 MSMg01no401_h01.b1 CHROMAT_FILE:
MSMg01no401_h01.b1 PHD_FILE: MSMg01no401_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:04 2005
         (561 letters)



>mm_chr5_41016167_41017127
          Length = 961

 Score = 1011 bits (523), Expect = 0.0
 Identities = 556/577 (96%), Gaps = 16/577 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactaatgtgctataagacagtttttctgttaaaaagtaattatatataaaaaagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aggactaatgtgctataagacagtttttctgttaaaaagtaattatatataaaaaagtaa 244

                                                                       
Query: 61  ttatgtcagggctagacagatggctccccagttaataatacttgctgctcttggaaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttatgtcagggctagacagatggctccccagttaataatacttgctgctcttggaaagga 304

                                                                       
Query: 121 cacaaaatcagtttctagcaccta----------------acatccagaactccaggtct 164
           ||||||||||||||||||||||||                |||||||||||||||| |||
Sbjct: 305 cacaaaatcagtttctagcacctacagggtggctcaaaacacatccagaactccagttct 364

                                                                       
Query: 165 aggaaatctgacaactccttcgggcctttgtgagtacatagagcacatacatatatgcag 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggaaatctgacaactccttcgggcctttgtgagtacatagagcacatacatatatgcag 424

                                                                       
Query: 225 gcaaacatttgcacacataaaatagaaaaatatgaaaatgtaatactaacaacaagacag 284
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 gcaaacatttgcacacataaaatagaaaaaaatgaaaatgtaatactaacaacaagacag 484

                                                                       
Query: 285 acggtctgatgggggtttacatgaagggaaaggtagcactttggggttttccagggctat 344
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acagtctgatgggggtttacatgaagggaaaggtagcactttggggttttccagggctat 544

                                                                       
Query: 345 gctttcctttatgtgggatccactaagccaagaacacagcaacctggaaagcctgtacat 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gctttcctttatgtgggatccactaagccaagaacacagcaacctggaaagcctgtacat 604

                                                                       
Query: 405 taggaaaacacagccctgcactaattgtgtagtcagtaaacaatacggcggtatatttgt 464
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 605 taggaaaacacagccctgcactaattgtgtagtcagtaaacaatatggcggtatatttgt 664

                                                                       
Query: 465 tactcaacatgtgttcttgtgatgagacctgaagcaagactctttctaaacaattaacgt 524
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 665 tactcaacatgtgttcttgtgatgagacctgaagcaagactctttctaaacaattaactt 724

                                                
Query: 525 tgagcatcgtttgaatattcaccatgttatttcaaat 561
           |||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgagcatcgtttgaatattcaccatgttatttcaaat 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)