BAC Information

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BAC

Clone NameMSMg01-401K03
Chromosome5 (Build37)
Map Location 46,620,840 - 46,621,398
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K03.T7 (MSMg01no401_k03.b1)MSMg01-401K03.TJ (MSMg01no401_k03.g1)
ACCAG500971AG500972
length747741
length of high quality
(start - end)
227 (90 - 316)559 (80 - 638)
definitionCHROMAT_FILE: MSMg01no401_k03.b1 PHD_FILE: MSMg01no401_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:18 2005CHROMAT_FILE: MSMg01no401_k03.g1 PHD_FILE: MSMg01no401_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTAATTTTGTGGCCGCAAAACGACGCACTATTCCAAAGCAAGCNGCG
GAATCCCACTTTTTCGAAAACTAAGTCTTCCNCNTTTCNACTGACTTAGA
GGACTAAGGCACATATACAGCGCCAATGAGGTTTTTATTATTGAAGATAT
TGTTCTCTTTATTTCATATCACCTCCCTATTTCATAGTTCCCAAATATAA
AAGATAAGAGGCAAGACACATCTTTATCACGTGATCTCATTTAACATGGT
GTCTTCTGGTTCCATCCTTTTCCTACAAATGATAATAGCTCATTCTTTTT
AAAGACTGAATAATTTNNTTGCTTATGCACATAGCATATTTTCTTTGTCC
ATTCATCTAATACTGCCTCTTAGGGTAAGTTCACATTGTGGCTTTTGTGA
ATAGTGCCACAATAAACACAAGGCCACACATGCCTCCTTTGTATGGTGAC
GATACCTCCTGATATACACCCAGGAATGGTATAGCTGGGTCACACAGTAG
CTCTATGTTTGACATTCGAAGGAGTGTCCATACTTTATTCTAAGAGTCCT
GCCCTAACTTACACTCTTTCCAATACTCTCCTATACTTAGATCTTATAAT
GCTTTTCTAGTACAGTTGTAACCATATCTCACTGTTGCCCTTTATTCCTA
TTTTTTTGTTTGCTTATGTATCCCTAATTTTCATTCTTCCTTTTTTTAAT
TTTTCCGCCCCTTTTTATTTTTTTCCTTCTTTTCCCTCCCTTTTACC
ACCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCAGAAAAATTCTCAGNGAGGAGAGGGTGTTGCTTTTC
TTATTTTCAATACAATGAGTATATTCTTATTGTCCTGTGTTAGAAAAATG
TGAAACTATTCAACAAATTTCTGAGTCAGTAAATTGATCACCATTTGTCT
AAGGACCTCCCCCCCCACACACACACACCAAAATAAACCAAAATGAAGCT
AATCTCATCAGAGTATCTGAGTATGGTTCTATGATAGCCAGTCCTAATCT
TCTTTCCTCTTCCTTTCCTTTCTCTTCAACTATGAAGTATGGAGGCCTTC
ATGCTACTCTACTGAAATGTGGTCTTGCCAGAATAAACAGAGGAACTGCA
CTGATTCACATGATGCAGTTGTCTGTGAAATGAAAGCTATTTTGGCTTGT
CTATGCTAACTTTTACAACAGGGTAATGACTTCTCACCAGATATACTTCT
CACCAGATATAGGTGTTTCTCTGCCAAACTTTAGAAGGGCTAAAGTTACT
CCATTATGATAATCTCTGCTGTGGTGGTGAGCTTACTGGGAAATGAAGTA
CATGCTCGAGCTTTCCCTCCAGTTTCTGGACAGATGCCTCATGAGCAATG
AATGTTATATTTATGTGAATGCATAGTTCTCTCCTTTGAGACATGGGCAT
CTCAAAAGAGCATCACTTAGCAAACTATGTGCTTTTATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k03.g1 MSMg01no401_k03.g1 CHROMAT_FILE:
MSMg01no401_k03.g1 PHD_FILE: MSMg01no401_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:18 2005
         (559 letters)



>mm_chr5_46620640_46621598
          Length = 959

 Score = 1036 bits (536), Expect = 0.0
 Identities = 554/560 (98%), Gaps = 2/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggagagggtgttgcttttcttattttcaatacaatgagtatattcttattgtcctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggagagggtgttgcttttcttattttcaatacaatgagtatattcttattgtcctgtg 260

                                                                       
Query: 61  ttagaaaaatgtgaaactattcaacaaatttctgagtcagtaaattgatcaccatttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagaaaaatgtgaaactattcaacaaatttctgagtcagtaaattgatcaccatttgtc 320

                                                                       
Query: 121 taaggacctccccccc-cacacacacacaccaaaataaaccaaaatgaagctaatctcat 179
           |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 taaggacc-cccccccacacacacacacaccaaaataaaccaaaatgaagctaaactcat 379

                                                                       
Query: 180 cagagtatctgagtatggttctatgatagccagtcctaatcttctttcctcttcctttcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagagtatctgagtatggttctatgatagccagtcctaatcttctttcctcttcctttcc 439

                                                                       
Query: 240 tttctcttcaactatgaagtatggaggccttcatgctactctactgaaatgtggtcttgc 299
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatctcttcaactatgaagtgtggaggccttcatgctactctactgaaatgtggtcttgc 499

                                                                       
Query: 300 cagaataaacagaggaactgcactgattcacatgatgcagttgtctgtgaaatgaaagct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagaataaacagaggaactgcactgattcacatgatgcagttgtctgtgaaatgaaagct 559

                                                                       
Query: 360 attttggcttgtctatgctaacttttacaacagggtaatgacttctcaccagatatactt 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attttggcttgtctgtgctaacttttacaacagggtaatgacttctcaccagatatactt 619

                                                                       
Query: 420 ctcaccagatataggtgtttctctgccaaactttagaagggctaaagttactccattatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcaccagatataggtgtttctctgccaaactttagaagggctaaagttactccattatg 679

                                                                       
Query: 480 ataatctctgctgtggtggtgagcttactgggaaatgaagtacatgctcgagctttccct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ataatctctgctgtggtggtgagcttactgggaaatgaagtacatgctcgagctttccct 739

                               
Query: 540 ccagtttctggacagatgcc 559
           ||||||||||||||||||||
Sbjct: 740 ccagtttctggacagatgcc 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)