BAC Information

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BAC

Clone NameMSMg01-401K16
Chromosome5 (Build37)
Map Location 15,185,097 - 15,185,640
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K16.T7 (MSMg01no401_k16.b1)MSMg01-401K16.TJ (MSMg01no401_k16.g1)
ACCAG500997AG500998
length758763
length of high quality
(start - end)
503 (75 - 577)543 (78 - 620)
definitionCHROMAT_FILE: MSMg01no401_k16.b1 PHD_FILE: MSMg01no401_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:21 2005CHROMAT_FILE: MSMg01no401_k16.g1 PHD_FILE: MSMg01no401_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGCGATCCGCGGA
ATCCATGTTTTCAGATTTTTCAGATTTTATATTTTATTAAAAAAGAATCA
TTGTCTATAAATTCTTTTATGTCCAACTATGCAAATACAACTTCAAGTAC
TCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCCAACAGGAC
ACATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTAGCTGAATT
TTCAAATCAGAAAGCAAAGATAAGAATTTACATTTTCAGTAACTTTAGGA
TCTGTGAGTGTTGTTAATTTATATACCGTTATGAGGAGTCCAGGTACAGC
AGGATATTAGGCCATGCAATTGGATAGGGAGATACAGAAGCTACATAGTA
CTTCAAGTGTTGCTATCATATATGTTTAAGTGACATTTTACAGATTAATG
CCAAGTAAAATCAAAATATAGTCCCCTACCCATTACATCTTAAAACACAA
TGATCTATCAACAGTTGCCATTTCACAGCAGAAAGAAAGCAGTAGGTATA
AATTGAACACAGAACTGCTTCTCTTGTAAGACATGAACACAGATATATAG
ATATATGCATACTTATACACTCTCTTTGAAATTCAAGGCGGGTAATTTGC
TTTACTACCATATAAAAACAACCTCGTTGTGGTCAGGGAAAAAAGCTCCA
ATTTCCCATTTAAAAAGAACATTGGCCGGTTGCGTTGGCGCACGCCTTTA
ATTCCTGT
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAGGAAAGAACAAGAGCCCAAAAG
GCAGAGGAGAAGTGTTCATGGGTGCACTAGCCAGTTACCTCTGGAAGAGC
AGCTGCATGGATTCAGGATGCACTTCATGCACACTGGGTGCCATGCTGGA
TGGCTGTGGAAAGTCATCTCTTACTAAGTCCTAATCAAAATGCTTCTAGA
GAACTCCACACTGAGTCAGTGTTTTCTGTTCCCAAGCAAACCACAGCACT
GATCTCCATCTGTTTTTCTCTTTATCTTAAACATCCTTCCAAATTGAAAA
ACAAAGCACAAAATCATCTTAATTGCCTTGCCAAAGGGTTGGAAAGGAGC
ACCACTTTTTGTTCAGAAGACAACTTCAGAAAACAAAAGAGAAGCCTCAA
ATGGGCCAAAAGCCACAAATTGAAAAACAAAAGAAAAACAAGGCTGGCTG
TCTACTGCCAGCAGGAGTTCACCAGGGAGAGGAGCTCTGACTCCAAAATA
GTCACTTTTCCATTTTGTCAATGATGGCAAAAGGCCATGGCTGCTGGCTA
AAGGAAGGAAAGGATGTTCCAGGAAGAAAACAGGGTCTCTTTGTTGCAAG
AACTGCATTCTCACTTGTATCTAACGCTGATAACTGGCAGCAGAAACTCT
GGGAGGGGCACATCTATGTGGTGACCCAGGAAGCTTTCTCCAGGGGCCAA
CACACTCTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k16.g1 MSMg01no401_k16.g1 CHROMAT_FILE:
MSMg01no401_k16.g1 PHD_FILE: MSMg01no401_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:21 2005
         (543 letters)



>mm_chr5_15184897_15185840
          Length = 944

 Score =  961 bits (497), Expect = 0.0
 Identities = 533/545 (97%), Gaps = 3/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccagtta 685

                                                                       
Query: 61  cctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccatgct 625

                                                                       
Query: 121 ggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaactcc 565

                                                                       
Query: 181 acactgagtcagtgttttctgttcccaagcaaaccacagcactgatctccatctgttttt 240
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgttttt 505

                                                                       
Query: 241 ctcttta-tcttaa-acatccttccaaattgaaaaacaaagcacaaaatcatcttaattg 298
           ||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctc-tgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaattg 446

                                                                       
Query: 299 ccttgccaaagggttggaaaggagcaccactttttgttcagaagacaacttcagaaaaca 358
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaaca 386

                                                                       
Query: 359 aaagagaagcctcaaatgggccaaaagccacaaattgaaaaacaaaagaaaaacaaggct 418
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaaggct 326

                                                                       
Query: 419 ggctgtctactgccagcaggagttcaccagggagaggagctctgactccaaaatagtcac 478
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggctgtctactgccagcaggcgttcaccagggagaggagctctgactccaaaatagtcac 266

                                                                       
Query: 479 ttttccattttgtcaatgatggcaaaaggccatggctgctggctaaaggaaggaaaggat 538
           |||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 tttaacattttgtcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggat 206

                
Query: 539 gttcc 543
           |||||
Sbjct: 205 gttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space:   497822
Effective search space used:   497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)