BAC Information

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BAC

Clone NameMSMg01-401O04
Chromosome5 (Build37)
Map Location 108,800,774 - 108,801,011
singlet/doubletsinglet
Overlap genenone
Upstream geneBrdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg
Downstream genePde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401O04.T7 (MSMg01no401_o04.b1)MSMg01-401O04.TJ (MSMg01no401_o04.g1)
ACCAG501164AG501165
length740741
length of high quality
(start - end)
238 (85 - 322)294 (329 - 622)
definitionCHROMAT_FILE: MSMg01no401_o04.b1 PHD_FILE: MSMg01no401_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:37 2005CHROMAT_FILE: MSMg01no401_o04.g1 PHD_FILE: MSMg01no401_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAACACGGTC
CGCGGAANTCNGGGGATAACCATACACACGTCGNAACTGGCCAAATAGTT
GAAAGTTTCACTGTTAATCCTTACCCCCGTTTTTCCAGGAATAGCCATGT
TAATCTGTCACTTCACATAGGCAGTGCAGGCATCTCTGTGCAAAACACCC
AGCTGTGAGTCTTCCAAAGAACCCATGAAACCATGGCTATGAGGTCTCAG
AGACACTATTGTGTTTCTTATTACGTTAAAAGCTTTCGTCTTATAGAATG
TAATCACAGAAAATATTAAATATTTTTTTTATGTCTTCATGACATAGAAA
TAAGCATTTATCTGGCTTCTTGAAGATGGAAGTGCCCGATGAGGATGCAG
CCCAGAAGCTGCCAGCTCACCAGAGCTGTCTTCCTGAACTTGCTTAGATA
TTTATAAGAAGGAATCCATTGCTAGCCATTTTAGTTGGCTTGGTTTGTCT
TGTTTTGTTTGTTTGCTTATTTGCTGCTGTTTTTTAATTTTGCAGAGAAT
CAGAGAGATGATTGATTCTCCATGCCTGGCCTCTTTTGTTCCACGTATGT
TCGTGAAGCGTGTCCATGATGCTGCTACACAGCGATAGTTCACTTATTGC
TGATAATGAATTTTATTATCTCACCCATTTTACTGCCGTACAAAACATAT
TGCTTCTTGCTTGTGCGTCCTGAATCACCCAGACTTGTTT
NCCTACAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTCAACAAAAATCTTTGACTTTTTTTTTTCTTGTA
TTTATCAGATGCCATTGTGTGGCTGGACTGTCATTCCTGTGGCTTTATTT
GAAAAAACTCCAGCCAAAGACAATAGCAATAGGCATGCCAAAATGGATGG
GGCAAAGATGGCCAGGCTTCAACCTTTCAGACAACTAAGAAATGCTGAGA
CTGGTAGAATTAGTCTTCTTCATAGAAGAGCACACCAACTGGCTGTCTAA
TACCAAATGGTCAGCCATGATTATTATTTACAAATAGCATCGTACGAACT
GAACAGGTTATATTTAGGAATATACATGTATATATACATGCATATGTGCA
TATATCAACAATTTTTTAAAAGGAGGCCATGAATTTGAAAAAGAGCAGCA
AAAAGGGGTCTATGGGAGGGTTTGGAGGGAGGGAAAGGAAAGGAAAAATA
GTATAATTATATTATAATGTCAAAAATAAAAGAAATAATAAAAATCAAAC
AACAAAACCCAATAAACATATGAATTAAAAAACCCCTGGAGCCAGCTTTG
CTGCTGTTCAGTCAGGGCCTGTTCTCTATGGCAGTGCCAGCACCCAGTTA
GTTAGTTATTTAATGTGTCATCATGGCAGTGTAGGGCATGACCTTTACCA
CCTTAACTTTTAGAGGTACTTCCCTTGGAGGTTCACCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_o04.b1 MSMg01no401_o04.b1 CHROMAT_FILE:
MSMg01no401_o04.b1 PHD_FILE: MSMg01no401_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:37 2005
         (238 letters)



>mm_chr5_108800574_108801211
          Length = 638

 Score =  406 bits (210), Expect = e-118
 Identities = 231/238 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactggccaaatagttgaaagtttcactgttaatccttacccccgtttttccaggaatag 60
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aactggccaaatagttgaaattttcactgttaatcctcacccccgtttttccaggaatag 260

                                                                       
Query: 61  ccatgttaatctgtcacttcacataggcagtgcaggcatctctgtgcaaaacacccagct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgttaatctgtcacttcacacaggcagtgcaggcatctctgtgcaaaacacccagct 320

                                                                       
Query: 121 gtgagtcttccaaagaacccatgaaaccatggctatgaggtctcagagacactattgtgt 180
           |||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||
Sbjct: 321 gtgagtcttccaaagaacccataaaaccatggctatgagttctcagagacacaactgtgt 380

                                                                     
Query: 181 ttcttattacgttaaaagctttcgtcttatagaatgtaatcacagaaaatattaaata 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttattacgttaaaagctttcgtcttatagaatgtaatcacagaaaatattaaata 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)