BAC Information

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BAC

Clone NameMSMg01-402K13
Chromosome5 (Build37)
Map Location 50,819,234 - 50,819,517
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402K13.T7 (MSMg01no402_k13.b1)MSMg01-402K13.TJ (MSMg01no402_k13.g1)
ACCAG501754AG501755
length720728
length of high quality
(start - end)
525 (77 - 601)284 (328 - 611)
definitionCHROMAT_FILE: MSMg01no402_k13.b1 PHD_FILE: MSMg01no402_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:38 2005CHROMAT_FILE: MSMg01no402_k13.g1 PHD_FILE: MSMg01no402_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCACACTATTCTCCCCAATGGACAGATCACCAGGAAAG
AAACTAAATAGATAAAAAATAAAAATAGCAGATGTTATGGCTCANAAGGC
CCTAACATATCAATAGTACATTTCACCCAAATACAAAGGAATATAACTTC
TCCTCAGCTGATCATGGAATTTTCTTCAAAATTGACCATATACTTGGTCA
CAAAGGAAGTCACAACAGATACAGAAAAATCAAAATAACCCCTTGTATCT
TGTCAGAGAAGCATGGATTAATGCTGTACTTCAAGAACATCAGAAAGCCT
ACAAACTCATGGAAACTGAGCATCTCTCTACTCAATGACACCTGGGTCAG
GGAAGTCTTTAATTCTAGAATCCAATGAAAATGAAGGCACAACATGCCCA
GATTTATGTGACACAGTAAAAACAGTGCTATGAGGAAAGTTTATAGCACG
GAATATTTTCATAAATAAACTGCAGAGTTCTCATACTAGAAACTTAATGG
CATAACTAGGAACACTAAAATTAATTAATTAATTAATTAATTAAAACAAA
ACAAAATAATATAAAAAAAATAAAAAAAAACCACACCCAAGAGGAGTGGA
GGACAGGATACAATTAAACTCTAGGTTAAAAATCAATCAATTAAAAGCAA
AGAGAAAATACAAAGAATCA
NCCCCCGATGATATGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTTTTGCTTTACATTTCCTG
TAGTTAATTTTTTGCATTAGTACTGTCTTTGACATTTTATTAGCTATAAT
ACTTTAATTTTTCACAAAATATATGGAGAATTAAGTACACAGCTTCTTAC
TGATAATGGAAATACTGATAATGGCAGGCTTTTTTGTTCAAACTCCTTGT
GTATTATTAGAATGAAGAACATTATTTTACCCAGATTCCTCAGAGATCTG
AGAAGACACTATTCAAACAACATTTATAAAATACAAACTTTATTAACCAT
CATTTTTATTAGACAATAACTTGTTGCTCTCTTTTCATGGAAAAATGGTA
TTATGAAGCAATATTACTCATAAAGAATGGAATTTGGAATGTACATGAGT
ACTAATGCAGTTACATGATCATAACTTAACAATGGAGGAAACAAAGCCAG
CCATAATGAGAGTCAGGAGCCAGAGCAACTGCAAGATGTCAGGAGAAACA
GTTTTTCTTTTCCCTTCTTCCAAGTAGATGTATATATGCACAGTGNGGCT
ACTCTTAACTGATGCCTACTTAAAGGAATGGCTGCAGTCATGTTTTTCTT
GCTTGATTTATTCATTGTGTTGCTTGACATTCTCCATTCATCTCTGAAAT
GGATGTATCAACAACCCATATGAACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_k13.g1 MSMg01no402_k13.g1 CHROMAT_FILE:
MSMg01no402_k13.g1 PHD_FILE: MSMg01no402_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:38 2005
         (284 letters)



>mm_chr5_50819034_50819717
          Length = 684

 Score =  528 bits (273), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatacaaactttattaaccatcatttttattagacaataacttgttgctctcttttca 60
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaaatacaaactttattaaccgtcatttttattagacaataacctgttgctctcttttca 260

                                                                       
Query: 61  tggaaaaatggtattatgaagcaatattactcataaagaatggaatttggaatgtacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaaaatggtattatgaagcaatattactcataaagaatggaatttggaatgtacatg 320

                                                                       
Query: 121 agtactaatgcagttacatgatcataacttaacaatggaggaaacaaagccagccataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtactaatgcagttacatgatcataacttaacaatggaggaaacaaagccagccataat 380

                                                                       
Query: 181 gagagtcaggagccagagcaactgcaagatgtcaggagaaacagtttttcttttcccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagtcaggagccagagcaactgcaagatgtcaggagaaacagtttttcttttcccttc 440

                                                       
Query: 241 ttccaagtagatgtatatatgcacagtgnggctactcttaactg 284
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttccaagtagatgtatatatgcacagtggggctactcttaactg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)