Query= MSMg01no402_l11.b1 MSMg01no402_l11.b1 CHROMAT_FILE:
MSMg01no402_l11.b1 PHD_FILE: MSMg01no402_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:43 2005
(417 letters)
>mm_chr5_113639581_113640397
Length = 817
Score = 698 bits (361), Expect = 0.0
Identities = 400/417 (95%), Gaps = 8/417 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgggtgacccgagggtaggtggcaggtggccaggctccctcatgctcctcta 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgggagactcgagggtaggtggcaggtggccaggctccctcatgctcctcta 264
Query: 65 tgcaaggtggtaaaccacactgatggtggaaactgtgtccctgtcctcttagcagccagg 124
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 tgcaagggggcaaaccacactgatggtggaaactgtgtccctggcctcttagcagccagg 324
Query: 125 actccctgtctgaggcctttccccaggacccagctgtgtctgaggtgaccttcatcttca 184
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 325 actccctgtctgaggcctttccccatgacccagctgtgtttgaggtgaccttcatcttca 384
Query: 185 ggcctgtggcacacacaaaactggccacaacctttaattctcatcccagctgtgtgagcc 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcctgtggcacacacagaactggccacaacctttaattctcatcccagctgtgtgagcc 444
Query: 245 tgggaatagagctcactctctccaggtc----tttttcttctagggtggcagcagggctg 300
|||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 445 tgggaatagagctcactctctccaggccaccat----cttctagggtggcagcagggctg 500
Query: 301 ctgagccttctatcaagggggtaagaatagaaacacaggaggcaggtctggggtgcggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagccttctatcaagggggtaagaatagaaacacaggaggcaggtctggggtgcggct 560
Query: 361 cagtgtagagaaccagcctgccgtgcatgatgccctcagtccttatcccagcactga 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgtagagaaccagcctgccgtgcatgatgccctcagtccttatcccagcactga 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_l11.g1 MSMg01no402_l11.g1 CHROMAT_FILE:
MSMg01no402_l11.g1 PHD_FILE: MSMg01no402_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:43 2005
(480 letters)
>mm_chr5_113784751_113785630
Length = 880
Score = 897 bits (464), Expect = 0.0
Identities = 476/480 (99%)
Strand = Plus / Minus
Query: 1 agaagggtccagagggatggctgagcatgcagacaccgctgctaatggagaaggagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agaagggtccagagggatggctgagcatgcagacaccgctgctaatggagaaggagcagg 621
Query: 61 agttccagttcaacagggacacgggacacgactcagcagtcatgtgctcacatctatcac 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 agttccagttcaacagggacacgggacacgactcggcagtcatgtgctcacatctatcac 561
Query: 121 gtctgctaatgagctttcctgcccagggctggggctccataatagagctctgaagacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtctgctaatgagctttcctgcccagggctggggctccataatagagctctgaagacagc 501
Query: 181 tccaaccagagttccagacctcggctgtgagccctggcccccactgtaccaccatccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tccaaccagagttccagacctcggctgtgagccctggcccccactgtaccaccatccaga 441
Query: 241 gtaaaaaactcgacccaaggtttcccgcaacatcagagaagggaggtgcctcgactctct 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 gtaaaaaactcgacccaaggtttcccgccacatcagagaagggaggtgcctcgactctct 381
Query: 301 tccccaatgccctttaggaagagaggcaggacaccctgttgttggtttctctggtgtcag 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 tccccagtgccctttaggaagagaggcaggacaccctgttgttggtttctctggtgtcgg 321
Query: 361 acaccagcagacaccgtcgtatgcatcacacatgggggaaaagtctggggaggagaatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acaccagcagacaccgtcgtatgcatcacacatgggggaaaagtctggggaggagaatgg 261
Query: 421 gagattcctatgcgcacacatggatgaagagattctgtcccactgtacctcctgagactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagattcctatgcgcacacatggatgaagagattctgtcccactgtacctcctgagactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
