Query= MSMg01no402_n15.b1 MSMg01no402_n15.b1 CHROMAT_FILE:
MSMg01no402_n15.b1 PHD_FILE: MSMg01no402_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:54 2005
(169 letters)
>mm_chr5_20616297_20616865
Length = 569
Score = 296 bits (153), Expect = 5e-85
Identities = 165/169 (97%)
Strand = Plus / Plus
Query: 1 gctcctccagccagggtctcagatagatctgcatttaaaagtctacattattaatgtaag 60
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gctcctccagccagggtctcaaatagatctgcgtttaaaagtctacattattaatgtaag 260
Query: 61 ccaaactcaggattaactaaagagcaatagtaacaatgaatagctttaaaacctacacag 120
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgaacttaggattaactaaagagcaatagtaacaatgaatagctttaaaacctacacag 320
Query: 121 gcaagtttggacccagcaaataaaagtaaaatctttgaaaaagaaagtt 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagtttggacccagcaaataaaagtaaaatctttgaaaaagaaagtt 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space: 90321
Effective search space used: 90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no402_n15.g1 MSMg01no402_n15.g1 CHROMAT_FILE:
MSMg01no402_n15.g1 PHD_FILE: MSMg01no402_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:54 2005
(504 letters)
>mm_chr5_20800651_20801558
Length = 908
Score = 948 bits (490), Expect = 0.0
Identities = 502/508 (98%), Gaps = 4/508 (0%)
Strand = Plus / Minus
Query: 1 cctgtcttaaaagtcgctttttcattaagagatgatttttcaaagctgatggcagagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cctgtcttaaaagtcgctttttcattaagagatgatttttcaaagctgatggcagagcct 649
Query: 61 ctagaaa----ttgtgagactagagaaacacagtgtggccaggaaggccccaaacagctg 116
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctagaaattatttgtgagactagagaaacacagtgtggccaggaaggccccaaacagctg 589
Query: 117 aaaaggctcaaactgataaacccatgttattgtttgagccagaacttaggcatgaagagc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aaaaggctcaaactgataaacccatgttattgtttgagccagaacttaggcatgaagagc 529
Query: 177 atctccctaccctcctttcctcttaaaaacaaacactaagccagtctccatgttctccaa 236
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atctccctaccctcctttactcttaaaaacaaacactaagccagtctccatgttctccaa 469
Query: 237 cctagaagctagtaattagagatatctttcttttagtttcttgtttggttttagttctcg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cctagaagctagtaattagagatatctttcttttagtttcttgtttggttttagttctcg 409
Query: 297 tatttacaaaaccaaacatgttgagttctgtcctggttagttttcacaatgtgacacaac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tatttacaaaaccaaacatgttgagttctgtcctggttagttttcacaatgtgacacaac 349
Query: 357 ctacaggcagttggaaagaagagtgtccacttcgaagatcacagtggccttggccattgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctacaggcagttggaaagaagagtgtccacttcgaagatcacagtggccttggccattgt 289
Query: 417 caatgaaggtgtgtcttgggcaatggttgatgttgggggaccagccctctgtggccagtg 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 caatgaaggtgtgtcttgggcaatgattgatgttgggggaccagccctctgtggccagtg 229
Query: 477 ccatccctagacaattaggtctaggcta 504
||||||||||||||||||||||||||||
Sbjct: 228 ccatccctagacaattaggtctaggcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 908
Length adjustment: 10
Effective length of query: 494
Effective length of database: 898
Effective search space: 443612
Effective search space used: 443612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
