BAC Information

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BAC

Clone NameMSMg01-403A10
Chromosome5 (Build37)
Map Location 3,958,294 - 3,958,842
singlet/doubletsinglet
Overlap geneAkap9
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf
Downstream geneCyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403A10.T7 (MSMg01no403_a10.b1)MSMg01-403A10.TJ (MSMg01no403_a10.g1)
ACCAG502034AG502035
length751745
length of high quality
(start - end)
555 (44 - 598)385 (71 - 455)
definitionCHROMAT_FILE: MSMg01no403_a10.b1 PHD_FILE: MSMg01no403_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:09 2005CHROMAT_FILE: MSMg01no403_a10.g1 PHD_FILE: MSMg01no403_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGCCCACAGGTATAAACTTCACTCTAATGAGATGCACACACCAGTT
CATGTCAGTCTAATGCCATATTCTCTGAGTGCCTTATATCCTTCCATCCA
CTAACTAATGAACTCTCTAAATACTGATTGTCTTTTTAAATTCATTTGTC
CATGGAAAGAAAATGAAATCCAATGGACCTGAAATACATAGTTACTCATA
ATTATTACTTATCACTGCAAATTAATAATCTTATATTTGAATTTTTAAGC
AGTCTCTTGAACTTGAAACAATCTGAGTTTACATTCACCCTAGCTTAGGA
CTCAGATGATACCAAAAGTAAGTTTTCTGAGCCTAAAAATCAAAACAGAC
TGTGCTTTCGATTTGCTATGTTATGCAACACGTTTGTTACATATAAAAAC
AGGCAGTGTGGTACAAGAGCTCTATCCTGCCTTCAGGTCACTTGGACAGT
TTGAATCCAAATTCTGGTATGAGTAGAGAGGACAGCAATAAACCACCTTT
GAATTTTCATTTCTCATTTGAAAATTCATTAAAAGCAAAAGGCTTTTAGA
ATGGGCTGTTCTTAGAATCTCAGATTATAAACTATGTGATACATATTGCC
CTCCCTTGCCACAAAGAGCACTGAATTCCTAAATATGTTTCCCAGAAATA
GAACAAATTTGTTGAACCAGTTGCATTTAGATTTCTTACCTAAACCTACA
A
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGTGAGAATTTTA
TTGAGGATTTTTTTTTTTATATTCATAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTT
CATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGCGAAATAGT
TTGTGTAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAATTCTGC
ATTAAACCCGTCTCGTCTTGTTTTTTTTTCGCCCGTGAGACCACTTGAAA
TTGCCCTCTACTTCTTTAACCGACACGCCACTGCCTTCATGCCCTCCTTT
TTCCTGCCCCTTTTTTTGCATCTGTGCTCCCCTTTCCCATTCCTTTTTTT
TTCCCCTCTCCCTTCCATCTTCTTCCTCCCTTTCTTTTTTTTCCCCATTT
TTACCTTCCCCCCTCCCTTCCTTCCTTCTTTTCTTTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_a10.b1 MSMg01no403_a10.b1 CHROMAT_FILE:
MSMg01no403_a10.b1 PHD_FILE: MSMg01no403_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:09 2005
         (555 letters)



>mm_chr5_3958090_3959044
          Length = 955

 Score = 1007 bits (521), Expect = 0.0
 Identities = 542/549 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagcccacaggtataaacttcactctaatgagatgcacacaccagttcatgtca 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaattccagtccacaggtataaacttcactctaatgagatgcacacaccagttcatgtca 694

                                                                       
Query: 65  gtctaatgccatattctctgagtgccttatatccttccatccactaactaatgaactctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gtctaatgccatattctctgagtgccttatatccttccatccactaactaatgaactctc 634

                                                                       
Query: 125 taaatactgattgtctttttaaattcatttgtccatggaaagaaaatgaaatccaatgga 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 taaatactgtttgtctttttaaattcatttgtccatggaaagaaaatgaaatccaatgga 574

                                                                       
Query: 185 cctgaaatacatagttactcataattattacttatcactgcaaattaataatcttatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cctgaaatacatagttactcataattattacttatcactgcaaattaataatcttatatt 514

                                                                       
Query: 245 tgaatttttaagcagtctcttgaacttgaaacaatctgagtttacattcaccctagctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 513 tgaatttttaagcagtctcttgaacttgaaacaatctgagtttacatccaccctagctta 454

                                                                       
Query: 305 ggactcagatgataccaaaagtaagttttctgagcctaaaaatcaaaacagactgtgctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggactcagatgataccaaaagtaagttttctgagcctaaaaatcaaaacagactgtgctt 394

                                                                       
Query: 365 tcgatttgctatgttatgcaacacgtttgttacatataaaaacaggcagtgtggtacaag 424
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccgatttgctatgttatgtaacacgtttgttacatataaaaacaggcagtgtggtacaag 334

                                                                       
Query: 425 agctctatcctgccttcaggtcacttggacagtttgaatccaaattctggtatgagtaga 484
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agctctatcctgccttcaggccacttggacagtttgaatccaaattctggtatgagtaga 274

                                                                       
Query: 485 gaggacagcaataaaccacctttgaattttcatttctcatttgaaaattcattaaaagca 544
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaggacagcaataaaccacctttgaattttcatttctcatttgaaaattcattaaaagca 214

                    
Query: 545 aaaggcttt 553
           |||||||||
Sbjct: 213 aaaggcttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)