Query= MSMg01no403_h08.b1 MSMg01no403_h08.b1 CHROMAT_FILE:
MSMg01no403_h08.b1 PHD_FILE: MSMg01no403_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:45 2005
(447 letters)
>mm_chr5_118072110_118072957
Length = 848
Score = 708 bits (366), Expect = 0.0
Identities = 423/442 (95%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 7 ggaattctgaactttatgccaagcaactcctgggtctgacgggccagcacaaggacggga 66
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct: 648 ggaattctgaactagatgccaagcaagtcctgggtctgacgggccagcacaagggcagga 589
Query: 67 cccaggcatcaacgtcagcaccaccatttaatccttcccagtaagcagcacccttcgggt 126
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cccagacaccaacatcagcaccaccatttaatccttcccagtaagcagcacccttcgggt 529
Query: 127 cagccctat-gggtatatattccctattgcagttgcctcccctgagccaggatctcccca 185
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagccccatggggtatatgttccctattgcagttgcctcccctgagccaggatctcccca 469
Query: 186 cagtaggatgatcggtcccggttgtaagatgcgcctccggttcaggctgccagcttctac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cagtaggatgatcggtcccggttgtaagatgcgcctccggttcaggctgccagcttctac 409
Query: 246 aaagatgcgcacgtctcctccccctcttccaggggtaatgagccttggcttcaagcctca 305
| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 408 agagatgcgcacgtctcctccccctcctctaggggtaatgagccttggcttcaagcctca 349
Query: 306 ttaaaccccattatataatcagccccatcccgggtatctttataaccccagcagttgcct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttaaaccccattatataatcagccccatcccgggtatctttataaccccagcagttgcct 289
Query: 366 tggtgggaacatggacggcggttcagcttcgtcaccttcactgccacctgctatagccac 425
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 288 tggtgggaacatggccggcggttcagcttcgtcaccttcactgccacctgctatagccgc 229
Query: 426 cccctgttacatccggatctga 447
||||||| ||| || |||||||
Sbjct: 228 cccctgtcacacccagatctga 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 848
Length adjustment: 10
Effective length of query: 437
Effective length of database: 838
Effective search space: 366206
Effective search space used: 366206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_h08.g1 MSMg01no403_h08.g1 CHROMAT_FILE:
MSMg01no403_h08.g1 PHD_FILE: MSMg01no403_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:45 2005
(142 letters)
>mm_chr5_117865909_117866450
Length = 542
Score = 259 bits (134), Expect = 4e-74
Identities = 140/142 (98%)
Strand = Plus / Plus
Query: 1 ccactagctggcatctgccagagagtggtggctgtggagcccagagcaaaggaggcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactagctggcatctgccagagagtggtggctgtggagcccagagcaaaggaggcttcc 260
Query: 61 cattggtatggccatgtatcccggagctggctgcttcggttggcctctggcttggcttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 cattggtatggccatgtatcccggagctggctgcttcggttggcctctggcttggtttgt 320
Query: 121 gagctccggaagcctgaagtgt 142
||| ||||||||||||||||||
Sbjct: 321 gagttccggaagcctgaagtgt 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space: 71556
Effective search space used: 71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
