BAC Information

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BAC

Clone NameMSMg01-403H12
Chromosome5 (Build37)
Map Location 91,639,254 - 91,639,735
singlet/doubletsinglet
Overlap genenone
Upstream geneCox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
Downstream geneBtc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403H12.T7 (MSMg01no403_h12.b1)MSMg01-403H12.TJ (MSMg01no403_h12.g1)
ACCAG502372AG502373
length773778
length of high quality
(start - end)		485 (43 - 527)238 (72 - 309)
definitionCHROMAT_FILE: MSMg01no403_h12.b1 PHD_FILE: MSMg01no403_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:46 2005CHROMAT_FILE: MSMg01no403_h12.g1 PHD_FILE: MSMg01no403_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCCCGTTTTCTGAAAGACTAGAAATTAGGTGGCTGATTCATTCACTCA
TTAACAATAGGGAGAATGCTCTGAGATCCCAAGCCATCCTAAGTCCAGCA
GAGCCTCCCTAATGCCTGGTCTTGCAAAATGCCTCTGAAATTTCAGGGGT
GTTTACTGGCATTTGTTCTCATCGTATGCTAATACGCCTATGTCATAGGA
ATTTGTTTGTGCACCATGGATGTTGGTAGAATTTGTTTTGAAGCACAACC
AGCTTTACTTAAGTAACCCAGAACAGTCAACTCAGACGGTGTAACATGTT
CACTTTTGATGCCTACCTTTTTAGTTTCAACTTTCAGACAAGCTAATCTA
CTATGGTGTCTAGGTTGAAACTGCACAAGGACGTGTTCCTATAGTGCACA
TTTGTGATCTCTGAAAAATCTCTCTGGATTCTGATTAATCAAGGCAGGTG
TGTCCTCAAGACTTTGTACACATGAACAAAAGGCCATGACTCTTTTCTTT
AGAGTGNTTTTTTTTTAATTCCCTTTGGAAACAAACACCCTGAGGAAGNA
TTCCTGGCCCATTTTTCATATTTTCAGCACCATTTTTATAATATAAAATT
TGTCCGGGGAAGCCATCCCAACCCCCCAATTTTTCTTTAAATACTTCCCC
TAAAGGCTTAAAACATTTGGGGGAACAGAAAACTTTCTGAAATTGGGCCA
AAACCCTCTTTTTTTCCCTCCCC

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATTAGGGAAAGGGGTCTTCAAACTGC
ATGTAACAAGTTCAGAGGCCATATTAGTCGAGATTCTCCAGAGAAACAGA
CCAGTGGAATGGTTATGCCTCATGAAAGAAAATGTAGTATTGACTCACAT
ATGACACATTGGGTAATCCAGCAATGGCTGTTGCACAGTGATGTCGCTGA
GAACCAGGTGTTCTCTGTCCAGGAGGCTGGATGTCTTAGTCTCATTCTGG
CAAGAAGGCCTTGGGTGCNTCTGGAGCAGGTATCAGTTCACACTGTGAGA
CTGAGACTAGCTAGGTTCTTATGATAATAGCTACAGGATAAAACTAATCA
CCTGCAAAGAGCAGCAGCATGGGTTTTTCTTACGCCCTTTATGTTGTGGC
CACAGCTGGAAGGGGCTGCCAGTGGCAGGGCACGCTTTCCAGCGATTCCT
CCCTGGCCCTGGATGCCTTCCCAGACCACCCAGAGGTCTTCTTACGTGGT
CCTATACCCTCTCGCACTGCCTCCTTAAGTTAATCCTCTTAATAGAACCA
CCCACCCCTTTATTTCCCCCACATGCCCCCCCCCTCGCTCCGTCTTTTTA
TTTTCTTTTTTCTTTTCCCCTTTTGCCACCCCTCCTTCTCCCCTTCTTCT
CCTCTTTTCCCCCCCTTCCCTTTCCCCCTCTTTCTTCTCCCCCCTTTCCA
CCTCTTTACCCCTTCTCTTACTCCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_h12.b1 MSMg01no403_h12.b1 CHROMAT_FILE:
MSMg01no403_h12.b1 PHD_FILE: MSMg01no403_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:46 2005
         (485 letters)



>mm_chr5_91639051_91639935
          Length = 885

 Score =  878 bits (454), Expect = 0.0
 Identities = 475/482 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccccgttttctgaaagactagaaattaggtggctgattcattcactcattaac 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccccggtttctgaaagactagaaattaggtggctgattcattcactcattaac 263

                                                                       
Query: 64  aatagggagaatgctctgagatcccaagccatcctaagtccagcagagcctccctaatgc 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 aatagggagaatgctctgagatcccaagccatcctaagtccagcagagcctccctaatac 323

                                                                       
Query: 124 ctggtcttgcaaaatgcctctgaaatttcaggggtgtttactggcatttgttctcatcgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggtcttgcaaaatgcctctgaaatttcaggggtgtttactggcatttgttctcatcgt 383

                                                                       
Query: 184 atgctaatacgcctatgtcataggaatttgtttgtgcaccatggatgttggtagaatttg 243
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgctaatacacctatatcataggaatttgtttgtgcaccatggatgttggtagaatttg 443

                                                                       
Query: 244 ttttgaagcacaaccagctttacttaagtaacccagaacagtcaactcagacggtgtaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||
Sbjct: 444 ttttgaagcacaaccagctttacttaagtaacccagaacagtcaactcagatgacgtaac 503

                                                                       
Query: 304 atgttcacttttgatgcctacctttttagtttcaactttcagacaagctaatctactatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgttcacttttgatgcctacctttttagtttcaactttcagacaagctaatctactatg 563

                                                                       
Query: 364 gtgtctaggttgaaactgcacaaggacgtgttcctatagtgcacatttgtgatctctgaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgtctaggttgaaactgcacaaggacgtgttcctatagtgcacatttgtgatctctgaa 623

                                                                       
Query: 424 aaatctctctggattctgattaatcaaggcaggtgtgtcctcaagactttgtacacatga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaatctctctggattctgattaatcaaggcaggtgtgtcctcaagactttgtacacatga 683

             
Query: 484 ac 485
           ||
Sbjct: 684 ac 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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