Query= MSMg01no403_i21.b1 MSMg01no403_i21.b1 CHROMAT_FILE:
MSMg01no403_i21.b1 PHD_FILE: MSMg01no403_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:53 2005
(532 letters)
>mm_chr5_77698513_77699444
Length = 932
Score = 924 bits (478), Expect = 0.0
Identities = 517/534 (96%), Gaps = 10/534 (1%)
Strand = Plus / Minus
Query: 5 gaattcagcagggttatc----ctactactgaaac-aacccttgtctcacaaaacaagga 59
||||||||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct: 894 gaattcagcaggg----ccaggctactactgaaacaaacccttgtctcacaaaacaagga 839
Query: 60 ctggtgtggtgacacagacctgtaatctatgcactcagggtccaaaagcaaagtttgggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ctggtgtggtgacacagacctgtaatctatgcactcagggtccaaaagcaaagtttgggg 779
Query: 120 acagaatgataca-agggggagttcaggccagccaaggtcatacatgaatctccaggata 178
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acagaatgatacactgggggagttcaggccagccaaggtcatacatgaatctccaggata 719
Query: 179 agcttttcttagcggactctgctcaggacctctgaaagaacagccagtgctcttaaccac 238
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 718 agcttttcttagcggactctgctcaggacctctggaagaacagccagtgctcttaaccac 659
Query: 239 tgagccatctctctaaccccctgaaacttttctttttggtctatgcctggggagatggac 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 658 tgagccatctctctaaccccctgaaacttttctttttggtctaagcctggggagatggac 599
Query: 299 catgaaagcccctcagacttatacttctgggccagaaagtcctcaaaacctttaggtatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 598 catgaaagcccctcagacttatacttctgggccagaaagtcctcaaaacctgtaggtatt 539
Query: 359 aggatatgctcaacaaatgcttgtctgaaatgaagttctcctaggtatgcctgcttgctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aggatatgctcaacaaatgcttgtctgaaatgaagttctcctaggtatgcctgcttgctc 479
Query: 419 tcttagaaaaatggcttcatgccgggcagtggtggcacacgcctttaaccccagcacttg 478
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 478 tcttagaaaaatggcttcatgccggacagtggtggcgcacgcctttaaccccagcacttg 419
Query: 479 ggaagcagaggcaggcggatttctgagttcgaggccagcctggttccaagacag 532
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 ggaagcagaggcaggcggatttctgagttcgaggccagcctggttccaggacag 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_i21.g1 MSMg01no403_i21.g1 CHROMAT_FILE:
MSMg01no403_i21.g1 PHD_FILE: MSMg01no403_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:53 2005
(397 letters)
>mm_chr5_77552447_77553243
Length = 797
Score = 690 bits (357), Expect = 0.0
Identities = 387/397 (97%)
Strand = Plus / Plus
Query: 1 agccttgcagggcacctctgcctggtcccggggctttcccatgaggtttctcttagactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccttgcagggcacctctgcctggtcccggggctttcccatgaggtttctcttagactt 260
Query: 61 catttgagcttcttcataccatggcgagctcgggtagttaaatgctccagtgcttaagtg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 261 catttgagcttcttcataccatggtgagctcgggtagttaaatgctccagtgcttaaatg 320
Query: 121 ctcccggttccatccaggcagcagctgcaccaacatttagggcctggtcttagaaatctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcccggttccatccaggcagcagctgcaccaacatttagggcctggtcttagaaatctt 380
Query: 181 ctgacatcatgcctatagcggtctgttggtcaccagccacacccacgttgcctcccacta 240
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 381 ctgacatcatgcctacagcggtctgttggtcaccagccacgcccacattgcctcccacta 440
Query: 241 gaaaggtagttctggaagatgagggtctagagaggcagttctgaaagaatacaaaccatt 300
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagttagttctggaagatgaggatctagagaggcagttctgaaagaatacaaaccatt 500
Query: 301 acgtccctctctggaagatgcaatgtaatatgccattaggtgtgaatgaacagaacgttc 360
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 acgtccctctctggaagacgcaatgtaatatgccattaggtgtgaatgaacggaacgttc 560
Query: 361 ttggaaaacatttgtatttgaagaaattatgtcaacc 397
|||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggaaacatttgtatttgaagaaattatgtcaacc 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
