BAC Information

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BAC

Clone NameMSMg01-403M03
Chromosome5 (Build37)
Map Location 132,158,935 - 132,159,382
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneCaln1, Wbscr17
Downstream gene4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403M03.T7 (MSMg01no403_m03.b1)MSMg01-403M03.TJ (MSMg01no403_m03.g1)
ACCAG502593AG502594
length760745
length of high quality
(start - end)
448 (70 - 517)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no403_m03.b1 PHD_FILE: MSMg01no403_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:10 2005CHROMAT_FILE: MSMg01no403_m03.g1 PHD_FILE: MSMg01no403_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAATTCT
ATACTTTCACAAAAATAATGAAAGCTTTGATTGGATCTCAGAAGAAAGAG
AAATCCTGGAGGAACAGTTATTGTTGAAGCCATGTGATCGATCTCATGAA
AACCAACACTTCCCATGTGATTGCAACTTTATGTTGCCATAACAACTTTC
CTGTGGAGTTAAATAGCCAGATGCCCATTTCTGCCATTTGTACTTAATGG
TACTTAAGTGTATCTATGTCTCCTTATTTTTTCTTTAACATTCCTTTTGA
ACAAAGGGAACTGTTGATTTTTGGTCTTTTGCTATGTATTGCAGTGCTAA
CTACTGGCCCACAAGGCCTGGCTGCCCTCAGGGATTAGAGAATCTGCATG
TACACAAGAGACACTATGTAACATTGCCTCTTCCACCCCCAAGTAATCCC
TGATTGGTGAATAAAGATGCCTGCAGCCTACAGCTGGGTATAAAAGAGAT
AGGCAGGGTTTGGGTTCCAGGCTTGGCACCTGAGGAGACAAGGGGCCGAG
GAGTAAGAAGGTGGACAGAGCAAAGATGCCATGCCGAGTCATGAATACAT
GGTCAGAAGGCTGGCTAACCAGAGTTAACAGCTGCCCATATGTACCCTGC
CCCATTATAATTCACGATTACTGGTGGGCTACTGTACTTTAATACCTCAT
ATGCCATCCCTTTTCCCACCTCCTTTGCCTCCCACTCCCATCACTCATTC
ACTCGTTGTG
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAATACCACTTGCAGTCTCACTGCA
AGTACATATGTTGCCTGGTATTCTCAGCCAGAAGAAAGTCACTTCAAGAA
ATAGGAGCAGGCTGTGGGAATGGCTCAGTAGGTGAAATGCTTGCTGTATA
TGCTACAGTTTGGATTCCTTGGTCCCATGTAAAAGCTGAGCCCAGCATCT
CAACACCAGTAGGAGTCGTGGGGAGAAGAAACATTCAGATTCGTGGAGCC
CACCAACCAGTTTTTGTTGTTATTTATAGCCAGCTCCGGGTTTTATGGGT
CACTGTCACAAATAATAAAGTAGAGCGCAAATTAATTAAAATACATGATA
GTAACCCCATTTTTTTGTCCATGGGGTCTGTGGGTGCTGGGGTCCTGGTC
AAGGTGGTGGCGGTTGTATGCACTTAGATGCAATGGTGATATCTCTTCCA
TTTCCAGAGGGAACTTATAGAACACTACATCGGTGTGTGCCAGAAAGAAC
TGCCTTTACCTTTCACGTTGTGGACCAGCTAAGGCTGATTTTAGGACGCG
AGAGCTAGCCTGGTCCTTTCGTTTCTTCCCGGACGTGGTTTTTGTCCCCC
CACTTCTTCCTTTGTTTTATATAACCTTTTCCCCATCCTCCCGCCTCCTC
CCTTTTTCCCCCTTTACCCGCCTTTCCCTCTTTTCCCTTCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_m03.b1 MSMg01no403_m03.b1 CHROMAT_FILE:
MSMg01no403_m03.b1 PHD_FILE: MSMg01no403_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:10 2005
         (448 letters)



>mm_chr5_132158735_132159582
          Length = 848

 Score =  812 bits (420), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagctttgattggatctcagaagaaagagaaatcctggaggaacagttattgttgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagctttgattggatctcagaagaaagagaaatcctggaggaacagttattgttgaag 260

                                                                       
Query: 61  ccatgtgatcgatctcatgaaaaccaacacttcccatgtgattgcaactttatgttgcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ccatgtgatcgatctcatgaaaaccaacacttcccatgtgattgcaactttatgctgcca 320

                                                                       
Query: 121 taacaactttcctgtggagttaaatagccagatgcccatttctgccatttgtacttaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacaactttcctgtggagttaaatagccagatgcccatttctgccatttgtacttaatg 380

                                                                       
Query: 181 gtacttaagtgtatctatgtctccttattttttctttaacattccttttgaacaaaggga 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacttaagtgtacctatgtctccttattttttctttaacattccttttgaacaaaggga 440

                                                                       
Query: 241 actgttgatttttggtcttttgctatgtattgcagtgctaactactggcccacaaggcct 300
           ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 actgttgaggtttggtcttttgctatgtattgcagtgctaactaatggcccacaaggcct 500

                                                                       
Query: 301 ggctgccctcagggattagagaatctgcatgtacacaagagacactatgtaacattgcct 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctgccctcagggactagagaatctgcatgtacacaagagacactatgtaacattgcct 560

                                                                       
Query: 361 cttccacccccaagtaatccctgattggtgaataaagatgcctgcagcctacagctgggt 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctccacccccaagtaatccctgattggtgaataaagatgcctgcagcctacagctgggt 620

                                       
Query: 421 ataaaagagataggcagggtttgggttc 448
           ||||||||||||||||||||||||||||
Sbjct: 621 ataaaagagataggcagggtttgggttc 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)