BAC Information

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BAC

Clone NameMSMg01-403M19
Chromosome5 (Build37)
Map Location 114,485,412 - 114,675,865
singlet/doubletdoublet
Overlap geneSvop, Usp30, Alkbh2, Ung, Acacb
Upstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1
Downstream geneFoxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403M19.T7 (MSMg01no403_m19.b1)MSMg01-403M19.TJ (MSMg01no403_m19.g1)
ACCAG502624AG502625
length800804
length of high quality
(start - end)
244 (63 - 306)323 (69 - 391)
definitionCHROMAT_FILE: MSMg01no403_m19.b1 PHD_FILE: MSMg01no403_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:13 2005CHROMAT_FILE: MSMg01no403_m19.g1 PHD_FILE: MSMg01no403_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,485,412 - 114,485,655)(114,675,543 - 114,675,865)
sequence
GCGGCGCTATACGACTCACTATTTTCAGAGATCCGCGGAATTCAGTCTCT
TGCAATAGAAGGTTGCGATGCTGTGAAGACAGGCTCAGGGAAGCGCCCCG
AGCATAAGACACAGCACTAGCGTGACCTCTGTGAACCTTGCTTCTGCCCA
CTAGTGAATTTTTATGCATTTTCTCCCATTTTGAGGTAGGCTGTGTTGGC
CTAGAGAGCAGAGAGATGGACTGCCTAGTGGCCAATGGAATCCCAGGGCT
GTGTTACATCAGACAGACAGACAGACAGACAGACAGACACAGACACACAC
ACACACACTTTTTCTTTCACACACACACGCCAACACAGGCAGTATATACT
AAGGTGACTACTGGTTTCTCCCATGTGATAATGAGTCTTCTGTATAATTA
TCATCCCCTAATTGCCTGCTCCTACCTTACCACTAATTGTCTTCTGGGAA
ACCCACTCCTCCACACAGACATCTAATATGTCTATTACAGTCCCTTCCCG
TGATAGCCTGCACGCGTCCCGAATATACTTGTTCCTCCCCTTCCCTGTAC
TTTTTCTCCCGAGCAATCTTCCTTACCTCTATTCACTCCTTTTACTTCGT
CCCCGTTATTTTCCCGTTTGTGTTGTGTTTCTTCCCCCTCCTCGAAATTT
TTTTCTTTTTTTGACTGTTCCGTTTCTGGTTCCTTCCTTTTACTTTCCAT
TCTCACTTTTCTTTTTTTCCCTCCTTTTATCCTTCCCTTTTTTTATCCCT
CTCCTTTTCTCCCTCCTGTTTCCATTTCCCCCTCCTTTTTTCCTATTTTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTCTGCCAAAAGAAATCCATGCAAAAGACAA
TTCAGTGAACGTAGACTCTGAGCCCTGCCCCTGCTAATTTTGTAATCGTT
AAAAATGGCTCAGTCTGCTTCCACAAGGAATCATCTGGAAACATGGTCCC
AATTGCTTCTAACTTACCCTTGAGAATAATTATTAAGTACCCGGCCTGAG
GCTCAGAGAACAGGGAAGACGATGGACTAAGGACTGGGACTAACCTCTTG
GGCAACGAGGAATGTGATTCTTCGGAGTCCGTAATCCACAAGGATGTGCT
TCTGCGTTGAAAAGCACAGATACGGTGAAAGATTATTTGGTTGTTAACGG
CCTGGCGTGCTGACCTATATTGCTACATGGATGAACTCCACACGTATACT
AACTGCATCATATCTGCCATAGGCTCCCCTATTAACCTACCTTCCTTTAT
GCCCTCAGCTCCCCTATTCTCTACACCCCTCTTTTTTCCCCTTCCTCTCG
GTTTGTTTACAAAAGCTGTCTACTATCTCCTTTCTCCTTGTTTTTTCAAG
CCATCTCTTCTTACTCTCTATAATTAATCCCCCCTTTTTCACTTTTCCCC
AAGCCCCATTCCATAATTCTTTATTTCCCTATCTATTGTCCATTCATATC
TNTACTCCCATATTTATCCTATTTCCCCCATTCACCCACTCATTTCCCCT
TTATTTCACCTCTTTTTTCCCTCCATTTCACCTTCCCTTTCCTCTCTTCT
TCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_m19.b1 MSMg01no403_m19.b1 CHROMAT_FILE:
MSMg01no403_m19.b1 PHD_FILE: MSMg01no403_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:13 2005
         (244 letters)



>mm_chr5_114485212_114485855
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcgatgctgtgaagacaggctcagggaagcgccccgagcataagacacagcactagcg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ttgcgatgctgtgaagacaggctcagggaagcgccccgagcagaagacacagcactagcg 260

                                                                       
Query: 61  tgacctctgtgaaccttgcttctgcccactagtgaatttttatgcattttctcccatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacctctgtgaaccttgcttctgcccactagtgaatttttatgcattttctcccatttt 320

                                                                       
Query: 121 gaggtaggctgtgttggcctagagagcagagagatggactgcctagtggccaatggaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggtaggctgtgttggcctagagagcagagagatggactgcctagtggccaatggaatc 380

                                                                       
Query: 181 ccagggctgtgttacatcagacagacagacagacagacagacagacacagacacacacac 240
           ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 381 ccagggctgtgttacatcagacagacagacagacagacacacacacacacacacacacac 440

               
Query: 241 acac 244
           ||||
Sbjct: 441 acac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no403_m19.g1 MSMg01no403_m19.g1 CHROMAT_FILE:
MSMg01no403_m19.g1 PHD_FILE: MSMg01no403_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:13 2005
         (323 letters)



>mm_chr5_114675343_114676065
          Length = 723

 Score =  586 bits (303), Expect = e-172
 Identities = 318/323 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgccaaaagaaatccatgcaaaagacaattcagtgaacgtagactctgagccctgc 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 523 tctctgccaaaagaaatccatgcaaaagacaattcagtgaaagtagactccgagccctgc 464

                                                                       
Query: 61  ccctgctaattttgtaatcgttaaaaatggctcagtctgcttccacaaggaatcatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccctgctaattttgtaatcgttaaaaatggctcagtctgcttccacaaggaatcatctgg 404

                                                                       
Query: 121 aaacatggtcccaattgcttctaacttacccttgagaataattattaagtacccggcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaacatggtcccaattgcttctaacttacccttgagaataattattaagtacccggcctg 344

                                                                       
Query: 181 aggctcagagaacagggaagacgatggactaaggactgggactaacctcttgggcaacga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 343 aggctcagagaacagggaagacgatggactaaggactgggactaacctcttgggcaacaa 284

                                                                       
Query: 241 ggaatgtgattcttcggagtccgtaatccacaaggatgtgcttctgcgttgaaaagcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ggaatgtgattcttcggagtccgtaatccacaaggatgtgcttctgcgttgaaaagcaca 224

                                  
Query: 301 gatacggtgaaagattatttggt 323
           ||||||| | |||||||||||||
Sbjct: 223 gatacggcggaagattatttggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)