BAC Information

Click to search

BAC

Clone NameMSMg01-403O10
Chromosome5 (Build37)
Map Location 133,649,469 - 133,649,900
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403O10.T7 (MSMg01no403_o10.b1)MSMg01-403O10.TJ (MSMg01no403_o10.g1)
ACCAG502702AG502703
length745759
length of high quality
(start - end)
236 (78 - 313)432 (77 - 508)
definitionCHROMAT_FILE: MSMg01no403_o10.b1 PHD_FILE: MSMg01no403_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:21 2005CHROMAT_FILE: MSMg01no403_o10.g1 PHD_FILE: MSMg01no403_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAATGGATCCGCGGAA
TTCTTTGTTACAAAAGAGCGCCATTNTTTAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTGGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGAATAAGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATCGACAGTGTCTTTTGCCTTGCAGATGCTTTGCAATTTTATTAG
GTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTTTAT
TTAGGAATTTTTCCTCNTTACCCATATCTTTGAGGCATTTCCCTACTTTC
TCCTCTACAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTC
TTCTACATGATAACTGCCAGTTGCGCCAGCACCATTTGTTGAAAATGCTG
TCCTTTTTCCACTGGATGGTTTTAGATCCCTTGTCAAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCCGGGCCTTCAATTCTATTCCACTGTTCTA
TTTGTCCGCCACTATATCATTAACATGAAAGTCTTATCATAATTGTTTTT
TTTTATAGCTTTCAAGCCCGCCTTGTCAATTTCTATCCTAGCCTTTTTTT
ATCCCCGACCTTACTTTTTGCTTTTCCACCGCTTTTCGCTACCTN
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAGCCACTCTATTCTGTGCTGAAA
CTTGCTCAATTTTGGCACAGCATAGACGAGCCTAGCTCAGAGTTTGCTTT
GCACAGGGTAACTTGGCACCGAGTCCGGGAAAGAGGTAAATTTTAAGTCG
CTGGTGCCAACTGGGTGCAGGAACAAGTCAGAAACAGAAAGCACACATCT
TCATATGCCAGCTGCTGAGACGCGAGGAAAACCCAAAACCTACCCGGGAA
ACATCTTTTCAACTATCCTTTTTTATTTGTGTGTGCACTCAATGCATTCG
TGCATATGAGTGTGCACATAGGTGTGTGTACATTTGTGTATGTGCACATG
TGTTTGTGCAGATGTGTATGTGTGTATGTAAGTCGTGCTGGGTTGAAACC
CAGAGCTTTATGAATGCTAAATGTGTTCTTTTAGAATTAATGTAATGATT
TTCGTGTGTGTGCGTGTGTGCGTGCGCGTTTTTTTTCCCCCCTTATTCCT
CCTCTCTTTTTCCTTTTTTCTCCTATCCTCCCCCCCCCTTCCCTCTTTCC
TTTGCCCTTTCTCCCCCCCCTTCCTTCCTTTTCTCCTCCCCCTTTCCTTT
CCTTTTTTTTTTTCCCTTCACCTCCCCTCTTCTCCCCTCCCTTTTTTTTC
CTTTCCCCTTTTTTTCGTTCCCCCCTCCCTTCGCCTCCTTCTTTCCCCTA
CCTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_o10.g1 MSMg01no403_o10.g1 CHROMAT_FILE:
MSMg01no403_o10.g1 PHD_FILE: MSMg01no403_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:21 2005
         (432 letters)



>mm_chr5_133649269_133650100
          Length = 832

 Score =  804 bits (416), Expect = 0.0
 Identities = 428/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccactctattctgtgctgaaacttgctcaattttggcacagcatagacgagcctagc 60
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aagccactttattctgtgctgaaacttgctcaattttggcacagcatagatgagcctagc 260

                                                                       
Query: 61  tcagagtttgctttgcacagggtaacttggcaccgagtccgggaaagaggtaaattttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagagtttgctttgcacagggtaacttggcaccgagtccgggaaagaggtaaattttaa 320

                                                                       
Query: 121 gtcgctggtgccaactgggtgcaggaacaagtcagaaacagaaagcacacatcttcatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcgctggtgccaactgggtgcaggaacaagtcagaaacagaaagcacacatcttcatat 380

                                                                       
Query: 181 gccagctgctgagacgcgaggaaaacccaaaacctacccgggaaacatcttttcaactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gccagctgctgagacgcgaggaaaacccaaaacctacccgggaaacatcttttcaactag 440

                                                                       
Query: 241 ccttttttatttgtgtgtgcactcaatgcattcgtgcatatgagtgtgcacataggtgtg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatttttatttgtgtgtgcactcaatgcattcgtgcatatgagtgtgcacataggtgtg 500

                                                                       
Query: 301 tgtacatttgtgtatgtgcacatgtgtttgtgcagatgtgtatgtgtgtatgtaagtcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtacatttgtgtatgtgcacatgtgtttgtgcagatgtgtatgtgtgtatgtaagtcgt 560

                                                                       
Query: 361 gctgggttgaaacccagagctttatgaatgctaaatgtgttcttttagaattaatgtaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgggttgaaacccagagctttatgaatgctaaatgtgttcttttagaattaatgtaat 620

                       
Query: 421 gattttcgtgtg 432
           ||||||||||||
Sbjct: 621 gattttcgtgtg 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)