Query= MSMg01no403_o16.b1 MSMg01no403_o16.b1 CHROMAT_FILE:
MSMg01no403_o16.b1 PHD_FILE: MSMg01no403_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:23 2005
(489 letters)
>mm_chr5_114896026_114896914
Length = 889
Score = 735 bits (380), Expect = 0.0
Identities = 391/398 (98%), Gaps = 7/398 (1%)
Strand = Plus / Minus
Query: 95 ttcaggcccgtctatgagagcctttctagagaggttgaactgaagtagaaagatctactc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ttcaggcccgtctatgagagcctttctagagaggttgaactgaagtagaaagatctactc 830
Query: 155 tgtgcatgtgcgtggccccatccctgaggttctagactgaataactaggaggactagagc 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tgtgcatgtgcgtggccccatccctgaggttctagactgaataactaggaggactagagc 770
Query: 215 catcctgctcctgactacagaggcaccttacactcctgccaggagacagatggactatgt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 catcctgctcctgactacagaggcaccttacactcctgccaggagacagatggactatgt 710
Query: 275 g---ttttactgagaaccaaaatacattctgaacttgcctctatcatagcaacgagaagg 331
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gcaa----actgagaaccaaaatacattctgaacttgcctctatcatagcaacgagaagg 654
Query: 332 gcaactgataaaacagcttaatatttttacacctgaataatctgcccaaaacagtccaca 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gcaactgataaaacagcttaatatttttacacctgaataatctgcccaaaacagtccaca 594
Query: 392 gagactcagggcacaggtctggtctacacggttaaaatgaactagctaggttggtgtggt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gagactcagggcacaggtctggtctacacggttaaaatgaactagctaggttggtgtggt 534
Query: 452 ggtgcatgcctttaatcccagcacttgagagaaaagag 489
||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggtgcatgcctttaatcccagcacttgagagaaaagag 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_o16.g1 MSMg01no403_o16.g1 CHROMAT_FILE:
MSMg01no403_o16.g1 PHD_FILE: MSMg01no403_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:23 2005
(433 letters)
>mm_chr5_114712030_114712863
Length = 834
Score = 659 bits (341), Expect = 0.0
Identities = 415/445 (93%), Gaps = 13/445 (2%)
Strand = Plus / Plus
Query: 1 cagcctgtgatagttaagtagaccctgtctcaaaagcaaacgagccaggcagtggtggca 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagcctgtgatagttaagaagaccctgtctcaaaagcaaacgagccaggcagtggtggca 250
Query: 61 cacgtctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcaaggcca 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 251 cacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggcca 310
Query: 121 gcctggtctacagagtgagttccaggacaaccagagctacacagagaaatcctgtctcga 180
||||| ||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||
Sbjct: 311 gcctgatctacagagtgagttccaggacagccagggctgcacagagaaaccctgtctcga 370
Query: 181 aaagccaaataaataaat-------aaa---ataaataaataaataaatatttcctcatc 230
|||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 371 aaagccaaataaataaatgaataataaataaataaataaataaataaatatttcctcatc 430
Query: 231 ctttatggaatatataagtcagtcactgtggacattgggacactgatgtccacctctgtc 290
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttcatggaagatgtaagtcagtcactgtggacattgggacactgatgtccacctctgtc 490
Query: 291 ctagccttgtgta-cagtgacatctcagtcacatcactttccgtcagtgctgacttcagt 349
|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 491 ctggccttgtgtagcagtgacatctcagtcacatcactttccgtcagcgctgacttcagt 550
Query: 350 ccactctctttgatgacagctccctgtcacttagggagcacctac-aatgtccaggattc 408
| ||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||
Sbjct: 551 ctactctctttgatgacagctccctgtcacttacggagcacctacgaa-gtccgggattc 609
Query: 409 tctcagaaccttctataacagaggg 433
||||||||||||||| |||||||||
Sbjct: 610 tctcagaaccttctagaacagaggg 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space: 349800
Effective search space used: 349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
