XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCACCATAGCATGAATTTTACCTCCCATTTATATAATCACTTATCTATGT
TATAAATTCTTGAAAATATTCTTTAAATTTTAAATTAGAATTCCATACTA
CTTTACTTTTTTGATCAAGTTGCTCAGTATTGAACATTGAGAGCTCAATC
GCTGGACTTGTGTATGTTTTTATCTGTATATTTGCTGTTTTAAGCCATTT
TTTTTCTAAAAATGGAATAGAACGTTATCTAGAAAATTATTGTATTATTA
CTTCCAGATGAAATAATAAGGTAAACTGGCAAATGACAAACATAGTATTC
AAGTTTTCTCAAGGATACTTAAGTTTGGCTTCTAGCAAATCCTTGTGGGC
ACAGGTCTTCTCGAAAACAAAGCACTCACTTGAAGAAACTGAAAATGGCT
TCCAGGAGGTGGCCAATAAACTAGCATGCCTCATCAGAGTAGGCAGAGAG
CTTTCAAGATACACACCTCCTAGAATGACTCTGTGGTAGAAGCTGTCTTA
AAGAAGAAAAGTATGAAGTCTTTTGAAATTGGTTTTTGCCATTGTGGGCC
TTTCCTTACCATCTCCCCTGCCCAAATAGGAAATTGTAAAAAAACTGAGA
ATAACCTTCTCTCCAGGAAAAAGGTAAAGGACCGGCACATTGAAATTGCC
TACGGCCCCCAAAAAAAAAAAAATATTTTTTCCCGAAAACATTTTTTTTT
CTCCAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTAAGAAGC
ACCTGAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TTAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATCGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGCAGTTCCTCAGAAAATTGGACATAGTATTACTGGAGGATCCCACAATA
CCTCTCCTGGGCATATATCCAGACGATGTTCCAACTGGTAAGAAGGACAC
ATGCTCAACTATGTTCATAGCGACCTTACTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTAC
ATTTACCCAATGGAGTACTACTCAACTATTAAAAAGAATGAATTTATGAA
ATTCCCTAGCCAAAGGATGGACTTGGAGGGCATCATTCCTGAGTGAGGGA
ACCCAATTCCCAAAAAAATTCTCCTGAAAGGGATCCCCTGGATACGGGAT
ATATTCCCTAATTTCATAAACCCCCGCAAATGAATTCTTTTTGGGGCACC
TGTTACTTTCCCATAAATGGATACCTTTGGGCTGGGTTTTTCCCTTTTGT
AT

Query= MSMg01no404_c17.b1 MSMg01no404_c17.b1 CHROMAT_FILE:
MSMg01no404_c17.b1 PHD_FILE: MSMg01no404_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:44 2005
         (467 letters)



>mm_chr5_85035892_85036759
          Length = 868

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%), Gaps = 1/464 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaccatagcatgaattttacctcccatttatataatcacttatctatgttat 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gaattcttcaccagagaatgaattttacctcccatttatataatcacttatctatgttat 787

                                                                       
Query: 65  aaattcttgaaaatattctttaaattttaaattagaattccatactactttacttttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaattcttgaaaatattctttaaattttaaattagaattccatactactttacttttttg 727

                                                                       
Query: 125 atcaagttgctcagtattgaacattgagagctcaatcgctggacttgtgtatgtttttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atcaagttgctcagtattgaacattgagagctcaatcgctggacttgtgtatgtttttat 667

                                                                       
Query: 185 ctgtatatttgctgttttaagcca-ttttttttctaaaaatggaatagaacgttatctag 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 666 ctgtatatttgctgttttaagccatttttttttctaaaaatggaatagaacgttatctag 607

                                                                       
Query: 244 aaaattattgtattattacttccagatgaaataataaggtaaactggcaaatgacaaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaaattattgtattattacttccagatgaaataataaggtaaactggcaaatgacaaaca 547

                                                                       
Query: 304 tagtattcaagttttctcaaggatacttaagtttggcttctagcaaatccttgtgggcac 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 546 tagtattcaagttttctcaaggatacttaagtttggcttctagcaaatccttgtggacac 487

                                                                       
Query: 364 aggtcttctcgaaaacaaagcactcacttgaagaaactgaaaatggcttccaggaggtgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aggtcttctcgaaaacaaagcactcacttgaagaaactgaaaatggcttccaggaggtgg 427

                                                       
Query: 424 ccaataaactagcatgcctcatcagagtaggcagagagctttca 467
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccaataaactagcatgcctcatcagagtaggcagagagctttca 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)