Query= MSMg01no404_n02.b1 MSMg01no404_n02.b1 CHROMAT_FILE:
MSMg01no404_n02.b1 PHD_FILE: MSMg01no404_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:37 2005
(403 letters)
>mm_chr5_7271915_7272717
Length = 803
Score = 741 bits (383), Expect = 0.0
Identities = 398/403 (98%)
Strand = Plus / Minus
Query: 1 cattgtgtccaaagcatctgagcagaaagagtcttattctaaataaaattcaaattgtct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 603 cattgtgtccaaagcatctgagcagaaagagtcttattctaaaaaaaattcaaattgtct 544
Query: 61 ctgacagaaagtatatgagctaaagatcttaaattagagttctgaataaataagtctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctgacagaaagtatatgagctaaagatcttaaattagagttctgaataaataagtctgtg 484
Query: 121 aggaaagtttaggacaaatgactggtaacttataacagtttttagtgataactcacataa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aagaaagtttaggacaaatgactggtaacttataacagtttttagtgataactcacataa 424
Query: 181 tttgaaatacattttaggggacaataatcactataattaaaattgacaaaacttccaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tttgaaatacattttaggggacaataatcactataattaaaattgacaaaacttccaaat 364
Query: 241 agaccaggttatgacaagaaccttagaaacttccaagactaaaagacaatgtcatataag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agaccaggttatgacaagaaccttagaaacttccaagactaaaagacaatgtcatataag 304
Query: 301 tttgttttatcaccctcttatccttatcttttttagaatttaaaaatatagcatagttga 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 303 tttgttttatcaccctcttatccttattttttttagaatttaaaaatatagcaaagttga 244
Query: 361 atctggtacaatctaagtgagaacttattaaaaacaataatga 403
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 atctgggacaatctaagtgagaacttattaaaaacaataatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_n02.g1 MSMg01no404_n02.g1 CHROMAT_FILE:
MSMg01no404_n02.g1 PHD_FILE: MSMg01no404_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:37 2005
(254 letters)
>mm_chr5_7070403_7071056
Length = 654
Score = 468 bits (242), Expect = e-136
Identities = 251/254 (98%)
Strand = Plus / Plus
Query: 1 cattgcaacccacaaaggaatgcttaccatcaagaacagaagtgagaacaaatgctaaga 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cattgcaacccacaaaggaatgcttaccatcaagaacagaagtgagagcaaatgctaaga 260
Query: 61 ggtgtggggagaagtgaacaccaataccctgttgatgaaatccaaaatagtttttttcac 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtggggagaagtgaacaccaatagcctgttgatgaaatccaaaatagtttttttcac 320
Query: 121 atacttctccccgtaatccaaggtgtactggaagatgtaataatataattccctgttagg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 atacttctccccgtaatccaaggtgtactggaagatgtaataatttaattccctgttagg 380
Query: 181 tgtattttctctgtaagattagctgtggaatatctattctctaggtcttttctgtgcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtattttctctgtaagattagctgtggaatatctattctctaggtcttttctgtgcttt 440
Query: 241 tgtgttgttgttgt 254
||||||||||||||
Sbjct: 441 tgtgttgttgttgt 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
