BAC Information

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BAC

Clone NameMSMg01-405E21
Chromosome5 (Build37)
Map Location 88,947,540 - 88,947,852
singlet/doubletsinglet
Overlap genenone
Upstream geneSult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam
Downstream geneIgj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405E21.T7 (MSMg01no405_e21.b1)MSMg01-405E21.TJ (MSMg01no405_e21.g1)
ACCAG503767AG503768
length797774
length of high quality
(start - end)		481 (48 - 528)528 (77 - 604)
definitionCHROMAT_FILE: MSMg01no405_e21.b1 PHD_FILE: MSMg01no405_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:15 2005CHROMAT_FILE: MSMg01no405_e21.g1 PHD_FILE: MSMg01no405_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGATGCTCTTCCTGCCGCGCCGTCTCTGACATGAAGAGCTGTG
CTTGCAAACGGTGAATCCAATAAACTGCCTTTTTTAGAGCACCAAAAATA
ACAGATAAAAAAACTCGGTACTGAGTAGCAGGTCTGTGACTGTGATAAAT
CTGACCACGTGGTTCAGAGGGTTTTGGAACTGACCAGCCAGAGAAATGTG
GAATCCTAAAACTACAGAAGTCTTGACTGCTATAAACCAAACTTAATAGA
TGATTATTTTGTCTTAGTTAAGGTTTCCATTGCTGTGAAGAGACACCATG
ACAAAGCAACTCTTATAAAGGACACCATTTAATTGGGGCTGCCTTATAGG
TTCATAGGTTTAGTCCATTATCATCAATGTGGGAGTATGTCATGGCACAG
GAGAAGTGGAGAGTTCTGAATCTTGATCTGACTTCAGCCAGGAGAAAAAA
ACTTACTTTCTGTACTGGACAGAACTTCAAAGCCCACATCCACAGAGACA
CACTTCCTCCAGTAAGGCCACACTTCCTATGGGCCAAATGTATTCAGACT
GCCAAATCTGGGGAGGGTGGCATTGTAGAAATCCGACTGCCCAGAGAAAT
GTGAACAGGGGATTCCTCTCTTCCTGAAATTTTAAAGGGAAAACCCCTGT
TGAGAACTGGTAATAAAACCGGTCCTGTGCCTTTCCAAATAAAAAGGGGG
GTTTTTTGTGTAGTTCCCGGAAAACTGAAGGGGCTGGATTTAAAAAC

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGCTT
ATTCAAACATTAACAGAAAGAACACAGGGCATCAGGACTTTGTTCCTGTG
GGCTGGGGGCTTATCTTTGTTCACATAGCAACTAGTTGATGTATGACTTT
ACCCCGGCGCCAAGGGGCAATAGACAGAGGGGAGATTCTGGCCAGATGGT
GTTGACTTAGATAATATAGCCCTGCTGGTCCTTGCATACCTTTTTATCTT
TACAGTCAAGATGTTCTTAGGAATGCCTTAACAACAGCCCTGCCCTGGCA
TGCCTGAGGGCTGTTCTGCTTTGTTCTCAGTCCCAGGCCGAGGCCGTGGG
CTCCTAAACTCACAAGTTCCTTCAAGACCACTTCTATTAGATAGACATAG
CCCCCAGTTGAGGGATGAGGCCACCCACCCATCTCAAAATCTTTAGCCCA
GAATTGTTCCTGTCTAAAGGAAATGAGGGAACAAAAAATGGAGCAAAGAC
TGAAAAAAAAATGCCATCTAGAGACTGCCCCACCTTGGGACCCATCCCAT
CTGCAGACACCAATGCCAGACACTATTGCTTATGCCAAGAAAGGCTTGGA
GACAGGACCCTGGCTAGCATGGTTGGCCTCTGAGAAGCTTTGCCACACCC
TTTAAAAACGCAAACTCCTATGCCACATTTAACCGGAGCCTAGCGATTAA
TGTAATGCCGCCAACATTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_e21.b1 MSMg01no405_e21.b1 CHROMAT_FILE:
MSMg01no405_e21.b1 PHD_FILE: MSMg01no405_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:15 2005
         (481 letters)



>mm_chr5_88947540_88948420
          Length = 881

 Score =  547 bits (283), Expect = e-160
 Identities = 305/313 (97%), Gaps = 2/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatgctcttcctgccgcgccgtctctgacatgaagagctgtgcttgcaaacgg 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 gaattcagatgctcttgatgccgcgccgtctctgacatgaagagctgtgcttgcaaatgg 254

                                                                       
Query: 65  tgaatccaataaactgccttttttagagcaccaaaaataacagataaaaaaactcggtac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgaatccaataaactgccttttttagagcaccaaaaataacagataaaaaaactcggtac 194

                                                                       
Query: 125 tgagtagcaggtctgtgactgtgataaatctgaccacgtggttcagagggttttggaact 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 193 tgagtagcaggtctgtgactgtgataaatctgaccacgtggttcagggggttttggaact 134

                                                                       
Query: 185 gaccagccagagaaatgtggaatcc--taaaactacagaagtcttgactgctataaacca 242
           |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||
Sbjct: 133 gaccagccagagaaatgtggaatcctttagaactacagaagtcttgactgctataaacca 74

                                                                       
Query: 243 aacttaatagatgattattttgtcttagttaaggtttccattgctgtgaagagacaccat 302
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  aacttaatagattattattttgtcttagttaaggtttccattgctgtgaagagacaccat 14

                        
Query: 303 gacaaagcaactc 315
           |||||||||||||
Sbjct: 13  gacaaagcaactc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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