Query= MSMg01no405_f11.b1 MSMg01no405_f11.b1 CHROMAT_FILE:
MSMg01no405_f11.b1 PHD_FILE: MSMg01no405_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:18 2005
(450 letters)
>mm_chr5_112778984_112779833
Length = 850
Score = 824 bits (426), Expect = 0.0
Identities = 444/454 (97%), Gaps = 8/454 (1%)
Strand = Plus / Plus
Query: 1 ggctctggctagtttgtgagtgtgtctgggagtcctgcgtttgaagagcaatcctggggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctctggctagtttgtgagtgtgtctgggagtcctgcgtttgaagagcaatcctggggt 260
Query: 61 gggggcagcatctctcacttagagctgtcatgaccctgtcacctattgccctccatctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggggcagcatctctcacttagagctgtcatgaccctgtcacctattgccctccatctct 320
Query: 121 gtgatgcctgtaatggcagcccagttaactatgcaatgtcacagcatggcctcagcacag 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gtgatgcctgtaatggcagcccagttaactatgcaatgtcacagcacggcctcagcacag 380
Query: 181 gtgcagcccacagggcaggtgcagctcacagcaggcctaggctgtccccaggatctgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcagcccacagggcaggtgcagctcacagcaggcctaggctgtccccaggatctgcag 440
Query: 241 tacacatgt----tttttgagcgaggccttggagggagcaggaaggaacatttcaggtca 296
||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tacacatgtgagct----gagcgaggccttggagggagcaggaaggaacacttcaggtca 496
Query: 297 gcccagacctggggggacagaaagtgcttggtgtctgtggaggtcagcctggctgcagtg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcccagacctggggggacagaaagtgcttggtgtctgtggaggtcagcctggctgcagtg 556
Query: 357 ggctaggctcaagtgaagaagagttttaagctaatgtctcatgtcagcacaggcagcagc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggctaggctcaagtgaagaagagttttaagctaatgtctcatgtcagcacaggcagcagc 616
Query: 417 aggttctgtcatggcgtcttcaggcacaggtgtg 450
||||||||||||||||||||||||||||||||||
Sbjct: 617 aggttctgtcatggcgtcttcaggcacaggtgtg 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_f11.g1 MSMg01no405_f11.g1 CHROMAT_FILE:
MSMg01no405_f11.g1 PHD_FILE: MSMg01no405_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:18 2005
(246 letters)
>mm_chr5_112966806_112967451
Length = 646
Score = 462 bits (239), Expect = e-135
Identities = 246/251 (98%), Gaps = 5/251 (1%)
Strand = Plus / Minus
Query: 1 tccccttgcttcccatcagctgtggtggtgaacaagtctgccctccacaccagaaccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccccttgcttcccatcagctgtggtggtgaacaagtctgccctccacaccagaaccatg 501
Query: 61 agtctttcttgttaaagaaaact-----aaaacaaaacaaaacaaaacaaaacagcaaac 115
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 agtctttcttgttaaagaaaactaaaacaaaacaaaacaaaacaaaacaaaacagcaaac 441
Query: 116 aaacaacaacaacaacaaaaagctggagctgcaaagccacaggaataattcatcccagag 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaacaacaacaacaacaaaaagctggagctgcaaagccacaggaataattcatcccagag 381
Query: 176 tgtctgctttgtttgtaactcaactattctacaaagccagactatttttgtttatcttct 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtctgctttgtttgtaactcaactattctacaaagccagactatttttgtttatcttct 321
Query: 236 agaaacttcag 246
|||||||||||
Sbjct: 320 agaaacttcag 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
