Query= MSMg01no405_g16.b1 MSMg01no405_g16.b1 CHROMAT_FILE:
MSMg01no405_g16.b1 PHD_FILE: MSMg01no405_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:23 2005
(449 letters)
>mm_chr5_84070518_84071366
Length = 849
Score = 588 bits (304), Expect = e-172
Identities = 331/340 (97%)
Strand = Plus / Minus
Query: 5 gaattcaaaacccttgcatttctttccaaagctttccctttccgtgcttgggaacatcac 64
|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 340 gaattcaaaacccttgaatttctttccaaagctttcccttgcagtgcttgggaacatcac 281
Query: 65 tacatttaggaaacctacacaattgtaatgcaaccaacctgctgtcatgagaatgcgcat 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 280 tacatttagaaaacctacacaattgtaatgcaaccaacctgctgtcatgagaatgtgcat 221
Query: 125 taatttattttattgattttttattggatattttatttctttccattccaaatgttatcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 taatttattttattgattttttattggatattttatttctttccattccaaatgttatcc 161
Query: 185 cctttctcgatcccccctgtgcccagaaacccccatctgcacgcctcctgcttctgtgag 244
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 160 cctttctcaatcccccctgtgcccagaaacccccatctgcacacctcctgcttctgtgag 101
Query: 245 ggtgttcctccatccacccacctacccactcctatctccccaccctcgcattcccctaca 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 100 ggtgttcctccatccacccacctacccactcctacctccccaccctcgcattcccctaca 41
Query: 305 ctggggcattgagccttcacctggaccaaggtctcttcct 344
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 40 ctggggaattgagccttcacctggaccaaggtctcttcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_g16.g1 MSMg01no405_g16.g1 CHROMAT_FILE:
MSMg01no405_g16.g1 PHD_FILE: MSMg01no405_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:23 2005
(485 letters)
>mm_chr5_83839329_83840213
Length = 885
Score = 901 bits (466), Expect = 0.0
Identities = 481/487 (98%), Gaps = 2/487 (0%)
Strand = Plus / Plus
Query: 1 attcctgatattgctagaatcttgctatttatatttcactctccgttcactagcatagag 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attcctgatattgctagaatcttgctatttatatttcacgctccgttcactagcatagag 260
Query: 61 tgatgtgaggacccaaaataaataacaaatgtgacttgaaaatgaaagcatttatctcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgtgaggacccaaaataaataacaaatgtgacttgaaaatgaaagcatttatctcat 320
Query: 121 atactactattaataatttgctaagttttacttattattttagctaatgatgatgctact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactactattaataatttgctaagttttacttattattttagctaatgatgatgctact 380
Query: 181 tttattggtacagaagctgtatattttatactatattgtaatactcaatcatcattggag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tttattggtacagaagctgtatattttatactatattgtaatactcaatcatcattagag 440
Query: 241 gattcaaagtcaggacacttagaagcaaataaataaatggcagtgttttaaaatttcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattcaaagtcaggacacttagaagcaaataaataaatggcagtgttttaaaatttcaaa 500
Query: 301 acaaaattaaaatacagtaaagctacaaggaacatgcaaagcatttcttataggtttcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaattaaaatacagtaaagctacaaggaacatgcaaagcatttcttataggtttcag 560
Query: 361 tcattggtatctgtcatttcaaatattttagcacattttgtctattattctctaatatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattggtatctgtcatttcaaatattttagcacattttgtctattattctctaatatat 620
Query: 421 acatatatgaatacacacgcatgcatatatatatatatatata--tatactanataaaat 478
|||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct: 621 acatatatgaatacacacacatgcatatatatatatatatatacatatactaaataaaat 680
Query: 479 tgagatt 485
|||||||
Sbjct: 681 tgagatt 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
