NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCG
GAATTCTTGGAGTGACCTCTGTGTATTCATGTTCACATGAAAATACCCAT
AATGATACAAGCCGATGTGTTCAGTTCTCCTCTCACTGGTCATTTAAAAA
TTATCCTCTGCTGAAATTATCCTCCCCAGTGTTTGCTTTCTACTTCCATA
TTGCATTTATACATTTATATTTTTGTAATATTTAAAATAAAACATATACT
TAAGTAATATTTGTAATCATTTTGTGCAATTAGATAACCCTTTAGAAATA
TATGCTCTGGATAAACTTTATTTTGTATATTTTCTTTAATTTTTTTATAT
TTATAATAAGAATGAACTTTTTGAAGTTAAGATAGTAACAGAGTAAATGG
AAAAATTTAGATATATTATTAGATATATGAAATTTGGATATATTTAATAA
ATATACTCATAAAATAGCACATTTGTATTTATTAATAATACACAAAATTT
AACCTATGTATACCGATATATCAGTTATTATTGAATGAAACAAAGTACAT
ATCTCTATGGTTGCTGTTGAATTCATTGAACAGTGGACAGTTCACACTAA
CATATAGTATTTGGTCATTCATATTTAACTATTTAATGTATATCATTTTC
TTTTAAATATCCATCAGTTCAATTTTATTAATTGTACTGGCTAGCTTTGT
GTCACCTTGACACAGCTGGAGTTATCACAGAGAA

CCCCATGATATGNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATCTTTCTAGTTCTTAGAGTTTTTG
TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAAAGTCTATGCTT
CAAATGCCATCATGATCCTCCTCAAGCCAAATGGTCACAACATTGACAGC
AATATCCTGTGACCCTAGTAGCAATTTATTTCTTAGTTAGAAGTTTTATT
TCTTCGATAAAATACCACTACTGATAGCAACTTGGAGACAAAAGAACTCA
TTTTTTTTTCTACTATATATCCCATCACTGAGGGATATCATGGCAGGAAC
TCCAGGTAAATAACTGGGGACAAGACATGAAGTAGAAACTTTGGAGGAAC
GCTGCTTAGTGCCTTGATCCTCATGTGTTGCTCAGGTTGATTTTTATACA
GTCCCCAATCACATGCCCAGGAATGCCATTACCCAAAATGATCTGGGTGC
TCCTAATCAATCATTAATCAAGCTAATGCTACACAAACTTAAATGCAGTC
CAATCTTTTTGATGCATTTTATTAAATTAAGATTCTTTTCCTAGATATAT
TTAGGTTTGAGTCAACTCTTTGACAATAAATCCAACAATTTATTGCAGAA
TATATACACACACATCCCTTTTCACCCCCTCCCCACTATTATCTATTTCC
TTTTATTAAAGCCAAATTTCCTTTTGTGTTTTTTACATTTACCACTTTCC
G

Query= MSMg01no406_g16.b1 MSMg01no406_g16.b1 CHROMAT_FILE:
MSMg01no406_g16.b1 PHD_FILE: MSMg01no406_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:43 2005
         (585 letters)



>mm_chr5_83178954_83179941
          Length = 988

 Score =  886 bits (458), Expect = 0.0
 Identities = 490/502 (97%), Gaps = 3/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 87  gctgaaattatcctccccagtgtttgctttctacttccatattgcatttatacatttata 146
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 988 gctgaaattatcctccccagtgtttgctttctacttccatattgcatttatacattaata 929

                                                                       
Query: 147 tttttgtaatatttaaaataaaacatatacttaagtaatatttgtaatcattttgtgcaa 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tttttgtaatatttaaaataaaacatatacttaagtaatatttgtaatcattttgtgcaa 869

                                                                       
Query: 207 ttagataaccctttagaaatatatgctctggataaactttattttgtatattttctttaa 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttagataaccctttagaaatatatgctctggataaactttattttgtatattttctttaa 809

                                                                       
Query: 267 tttttttatatttataataagaatgaactttttgaagttaagatagtaacagagtaaatg 326
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tttttttatatttataatgagaatgaactttttgaagttaagatagtaacagagtaaatg 749

                                                                       
Query: 327 gaaaaatttagatatattattagatatatgaaatttggatatatttaataaatatactca 386
           || ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 748 gacaaatttagatataatattagatatataaaatttggaaatatttaataaatatactca 689

                                                                       
Query: 387 t---aaaatagcacatttgtatttattaataatacacaaaatttaacctatgtataccga 443
           |   |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 688 ttataaaatagcacatttgtatttattaataatacacaaaatttaaactatgtataccga 629

                                                                       
Query: 444 tatatcagttattattgaatgaaacaaagtacatatctctatggttgctgttgaattcat 503
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 628 tatatcagttattattgaatgaaacaaagtacatatctctatggttgctgatgaattcat 569

                                                                       
Query: 504 tgaacagtggacagttcacactaacatatagtatttggtcattcatatttaactatttaa 563
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgaacagtggacagttcaaactaacatatagtatttggtcattcatatttaactatttaa 509

                                 
Query: 564 tgtatatcattttcttttaaat 585
           ||||||||||||||||||||||
Sbjct: 508 tgtatatcattttcttttaaat 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 988
Length adjustment: 10
Effective length of query: 575
Effective length of database: 978
Effective search space:   562350
Effective search space used:   562350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)