Query= MSMg01no407_c15.b1 MSMg01no407_c15.b1 CHROMAT_FILE:
MSMg01no407_c15.b1 PHD_FILE: MSMg01no407_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:43 2005
(659 letters)
>mm_chr5_55667839_55668897
Length = 1059
Score = 1222 bits (632), Expect = 0.0
Identities = 653/660 (98%), Gaps = 1/660 (0%)
Strand = Plus / Plus
Query: 1 atctgctgcctccttcc-cacctgcctagtgctgaggtttcagattgattcacagtatgc 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atctgctgcctccttccacacctgcctagtgctgaggtttcagattgattcacagtatgc 259
Query: 60 aattttctatgtaatctgaagatccaaactcatttgcttgtgcttgtgtaataagcactt 119
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 260 aattttctatgtgatctgaagatccaaactcatttgcttgtgcttgtgtagtaagcattt 319
Query: 120 tactgagacatctctttggctactacatttaagtttattttatatttgagaatctgtgtg 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tactgagacatctctttggctcctacatttaagtttattttatatttgagaatctgtgtg 379
Query: 180 agttctaactgatgcaacataatttcattatatatgtatttattttatatgatagtaaaa 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 agttctaactgatgcaacataatttcattatatacgtatttattttatatgatagtaaaa 439
Query: 240 tagtaacaacttcatattaaaatgtgcgcaagaagcttaaaaattacaaacatgaaattt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagtaacaacttcatattaaaatgtgcgcaagaagcttaaaaattacaaacatgaaattt 499
Query: 300 tctccaacaagtcataccctaacagacattttctaagttcttaagtggccccataaatct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctccaacaagtcataccctaacagacattttctaagttcttaagtggccccataaatct 559
Query: 360 ataatgtcaatatttaagaaatttcttatcatcaatataggtaagatacatcaccattaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ataatgtcaatatttaagaaatttcttatcatcaatataggtaagatacatcaccattaa 619
Query: 420 tgttatattctaaaagaatctctatttattacaaataaatatcctataagttttcaggat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgttatattctaaaagaatctctatttattacaaataaatatcctataagttttcaggat 679
Query: 480 gtagactgcagtgtgcatagagttctgtctagacatcttaaaaacaaagtctggcctgga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtagactgcagtgtgcatagagttctgtctagacatcttaaaaacaaagtctggcctgga 739
Query: 540 aaacctcaaaattcactgtgaagagcagagtttctcctcaaactcatgattcttctgtgt 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 740 aaacctcaaaattcactgtgaagaacagagtttctcctcaaactcatgattcttctgtgt 799
Query: 600 tttctttccgttccaccctaatttttgttttacttatttatatggaagctagatgctaga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tttctttccgttccaccctaatttttgttttacttatttatatggaagctagatgctaga 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_c15.g1 MSMg01no407_c15.g1 CHROMAT_FILE:
MSMg01no407_c15.g1 PHD_FILE: MSMg01no407_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:44 2005
(531 letters)
>mm_chr5_55823784_55824713
Length = 930
Score = 944 bits (488), Expect = 0.0
Identities = 516/532 (96%), Gaps = 13/532 (2%)
Strand = Plus / Minus
Query: 1 tataaaataatatatatatatatacatatatatatatatagttaacattataataataat 60
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 tataaaataatatat----------atatatatatatatagttaacattataataataat 573
Query: 61 tatcaaaataactgaaacatataatagcttttgcctcatactcatacaacaaacctctta 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 572 tatcaaaataactgaagcatataatagcttttgcctcatactcatacaacaaac--ctta 515
Query: 121 tagcataaatagaaagaattataatatttgaaggttctataagaacctttcagtacatcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 514 tagcataaatagaaagaattataatatttgaaggttctataagaacctttcagtacgtcc 455
Query: 181 ttaataaagaattaatttcgaacagcattagattttaag-aaaaaaaatgaaggcactct 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 454 ttaataaagaattaatttcgaacagcattagattttaagaaaaaaaaatgaaggcactct 395
Query: 240 acaaagtgctaactagttccccatattatgcacagagtctctttatactatatttgtaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 acaaagtgctaactagttccccatattatgcacagagtctctttatactatatttgtaca 335
Query: 300 ctatgttatatattgttactgagcgacattgacaggttgttatgaactgttctcaatcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctatgttatatattgttactgagcgacattgacaggttgttatgaactgttctcaatcca 275
Query: 360 gacctaacctctctccatggggttttcctacactgaacctcattcagaaattgacttcac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gacctaacctctctccatggggttttcctacactgaacctcattcagaaattgacttcac 215
Query: 420 ttgtgctcatcatctctcctctagctctcctcattgtgacagttttttagttttctttgg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttgtgctcatcatctctcctctagctctcctcattgtgacagttttttagttttctttga 155
Query: 480 cattgacaactttgacatatttgagcagcatttgttagacattttgtgtaat 531
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cattgacaactttgacatatttgagcagcatttgttagacattttgtgtaat 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
