Query= MSMg01no407_d06.b1 MSMg01no407_d06.b1 CHROMAT_FILE:
MSMg01no407_d06.b1 PHD_FILE: MSMg01no407_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:47 2005
(538 letters)
>mm_chr5_42694577_42695514
Length = 938
Score = 837 bits (433), Expect = 0.0
Identities = 460/469 (98%)
Strand = Plus / Plus
Query: 70 agggaactaattcttgtgagcaactgagcaaacatagaagctcttgtgatgtgcagtaaa 129
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 270 agggaactaattcttgtgagcagctgagcaaacatagaagctcttgtgatgtgcagtaaa 329
Query: 130 tgaaaatactctgtaaaatgtgttgggtgtgtattgtttggctagaaaaactcaaccttg 189
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 330 tgaaaatactctgtaaaatgtgttgggtgtatattgtttggctagaaaaactcaaccttg 389
Query: 190 gctttctcctccctctctctactccttaaaggacttcccatgcttggaaatatggagggc 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 gctttctcctccctctctctactccttaaaggacttcccatgcttggaaatatggaggac 449
Query: 250 ttcccatctcagggaggagtgaggtgtcttaagaccaatatcaatgaaattggcactgtc 309
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 450 ttcccatcccagggaggagtgaggtgtcttaagaccaatatcaatgaaatcagcactgtc 509
Query: 310 aggtgacagcatttgattggtattactttttgctttggcctaattttatgagactggatg 369
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 510 aggtgacagcatttgattgatattacttcttgctttggcctaattttatgagactggatg 569
Query: 370 agaggaagcaaagacaagaccccatcttctgatgaatcttaccctcattgtactaactac 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agaggaagcaaagacaagaccccatcttctgatgaatcttaccctcattgtactaactac 629
Query: 430 attcaatttccaggacaagaatctttgaaaagttcatcaaggaaggggaaatctcattca 489
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 630 attcaatttccaggacaagaatcttttaaaagttcatcaaggaaggggaaatctcattca 689
Query: 490 gcaaagatcagttttaggggcccaagggaataaaagccagcttattagc 538
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gcaaagatcagttttaggggcccaagggaataaaagccagcttattagc 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_d06.g1 MSMg01no407_d06.g1 CHROMAT_FILE:
MSMg01no407_d06.g1 PHD_FILE: MSMg01no407_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:47 2005
(511 letters)
>mm_chr5_42848184_42849094
Length = 911
Score = 756 bits (391), Expect = 0.0
Identities = 401/405 (99%), Gaps = 2/405 (0%)
Strand = Plus / Minus
Query: 107 taatttaactagacttagagtcaccatggaattatccttctgagggtagttcagaaaaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 taatttaactagacttagagtcaccatggaattatccttctgagggtagttcagaaaaga 852
Query: 167 ttaactgggggaaagaacatacaccctgatatggattgtattatccaatgtactgagatc 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 851 ttaactgggggaaagaacatacaccctgatatggattgtattatccaatgcactgagatc 792
Query: 227 ctggaacaaaagaagaaagtaaggtgagttgagcaccagtattcatctctctttgtttcc 286
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 791 ttggaacaaaagaagaaagtaaggtgagttgagcaccagtattca--tctctttgtttcc 734
Query: 287 tcaccacagacatataatgtgatacccagtaaggaaaaaaagtgggtagagatgagcaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tcaccacagacatataatgtgatacccagtaaggaaaaaaagtgggtagagatgagcaga 674
Query: 347 ccctatatacaatactgcattgagcaggggaccatgagacaatgcagtacaactaagcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccctatatacaatactgcattgagcaggggaccatgagacaatgcagtacaactaagcac 614
Query: 407 agcttgtttcgggaacttaagaatagctcacacatccaagaataagtgggcagtatacac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agcttgtttcgggaacttaagaatagctcacacatccaagaataagtgggcagtatacac 554
Query: 467 tgcacttgtagctttagaaaaaataaaaataaaaagaggtcataa 511
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgcacttgtagctttagaaaaaataaaaataaaaagaggtcataa 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
