Query= MSMg01no407_e10.b1 MSMg01no407_e10.b1 CHROMAT_FILE:
MSMg01no407_e10.b1 PHD_FILE: MSMg01no407_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:52 2005
(498 letters)
>mm_chr5_41094046_41094943
Length = 898
Score = 922 bits (477), Expect = 0.0
Identities = 489/493 (99%), Gaps = 1/493 (0%)
Strand = Plus / Minus
Query: 6 aattctttctctctctttgtgtgtgtgtgtgtgtgtatgtgtgtgttaacatggctcaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aattctttctctctctttgtgtgtgtgtgtgtgtgtatgtgtgtgttaacatggctcaac 496
Query: 66 aaggctagaacaggactttgtgtgtcttctttgatggcgtccttccataatgtttgatgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaggctagaacaggactttgtgtgtcttctttgatggcgtccttccataatgtttgatgc 436
Query: 126 ctggtctctctgtgatttggaagctcaccaatttggctatccctgtgagctgagtccacc 185
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 435 ctggtctctctgtgatttggaagctcaccaatttggctatccctgtgagctgtgtccacc 376
Query: 186 tgtctccacctccaggtctgggtctaccgtttgcgcagacatgcctgccttttggtgttt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgtctccacctccaggtctgggtctaccgtttgcgcagacatgcctgccttttggtgttt 316
Query: 246 gtgtcagtaaatccctgtttttgcaagtgagtgctgggagtcaccctgtcctctcctagc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtgtcagtaaatccctgtttttgcaagtgagtgctgggagtcaccctgtcctctcctagc 256
Query: 306 atatttttctgagacatgtgtttagctgccttagatctcagaagtgaggctatcaggcca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atatttttctgagacatgtgtttagctgccttagatctcagaagtgaggctatcaggcca 196
Query: 366 gggagcacatggatgtttctgtgtctgcttccctagcactgggattgcaagcagtttcct 425
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 195 gggagcacatggatg-ttctgtgtttgcttccctagcactgggattgcaagcagtttcct 137
Query: 426 ctacacctggctttttctacatgtattttagagatcaaagtgaggttttcttgtgtgcat 485
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctacacccggctttttctacatgtattttagagatcaaagtgaggttttcttgtgtgcat 77
Query: 486 ggcatgcagttta 498
|||||||||||||
Sbjct: 76 ggcatgcagttta 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_e10.g1 MSMg01no407_e10.g1 CHROMAT_FILE:
MSMg01no407_e10.g1 PHD_FILE: MSMg01no407_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:52 2005
(480 letters)
>mm_chr5_40917352_40918231
Length = 880
Score = 862 bits (446), Expect = 0.0
Identities = 467/478 (97%), Gaps = 7/478 (1%)
Strand = Plus / Plus
Query: 1 tcactgtaatcgctctgctcctccattaagataccagttttctttctaagagacctttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactgtaatcgctctgctcctccattaagataccagttttctttctaagagacctttaa 260
Query: 61 atcaccttttcaatattaataaggcatagaaacatttttctacagtatttggaaagacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaccttttcaatattaataaggcatagaaacatttttctacagtatttggaaagacag 320
Query: 121 aattctatttttgccttctcctaggaaggcttttgaggtcaggaaataaaataaatttta 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattctatttttgccttcccctaggaaggcttttgaggtcaggaaataaaataaatttta 380
Query: 181 aagcaataaatacatactaatctccagaaagaggagatcaaggtgatgcgtctgctttca 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aagcaataaatacatactaatctccagaaagaggagatcaaggtgatgtgtctgctttca 440
Query: 241 aaaagtaataattggggactggggaaatgtcttggtggctaagaggattggcttcctttg 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 aaaagtaataattggggactggggaaatgccttggtggctaagaggattggcttcctttg 500
Query: 301 caaaggaaccaggttctatttccagcaaccacaattacacagctcactactgctattaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaggaaccaggttctatttccagcaaccacaattacacagctcactactgctattaaa 560
Query: 361 tccagttctagggcaactgatgctgcttctagctgactcagccatctgatacacatacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagttctagggcaactgatgctgcttctagctgactcagccatctgatacacatacac 620
Query: 421 caaggtacatatataccataaaataagtaaacaaataacaaataaatatgtttttttt 478
|||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 621 caaggtacatatatacaataaaataagtaaacaaataa-------atatgtttttttt 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
