TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTCATGCCCAAAGCTATTTTAATCACACCTATACCCTTTTCTCCC
CATGACTTGATTGTATCCACTTCCTACTCCATATCTCCTTGCAACTTTGT
GTCCTCTTATTTGTGCTGTAGCTAAACTTGTAGGTGTGGGATCATCTGCA
GTTTACCACAGACCACACTCTGAAGGAGAACTGACTCTCTATCCCCAAGA
TGATGTGACCAGCTTCTCAGCTAAGGGTGGGGGTGCCTGTGCCTTTCTCT
GTTCTGTATTGGAACTTCGACTTGCCTTGATCTTGTGCAGGCAATCACAG
CTGCAGAGAGTTCATGAGAGAAGAGGTCCCATTATGTCCAGAAGACACCC
TTCCAGTCTTCCCCGAGTTCTGGTTCTTCTCTTTCAGTTCCTCTCCCACT
GTGATAACTGAGCCATCAGAGAGGAGTGTAACACAGATGTCCTGTTTGGG
GCTACAGTCCATCAAATACTCTAGAGCTTACTACCTTTAGAGACAGAAAT
ATATTTACATATGGAAGGAAGGATTCTTATGTATTTAATCCAGAATCCAA
GTGCGTAGCTTTTAAGAGTGGGAGAATTAACTCTGCTTTTTTTCTTTTTG
TTGTTTTGAAGAAGAAAAGCCCAGTGAGTGTTTTTCTGGTTTGGCTAAAT
GGAAGTGAAATGCATTCCTTTCTGGGTCACTGAGTTAATCAGGTC

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGATGGAGCCAGGCACAGAGAT
TCACCCAGAAAGATGTGAGGAGATGGACTCATTGGTACCTGAGCACAGGT
AACCAGCCACATGGCAGAATGTAGGTCAAAATAAATGGGTTATTTTAGTT
ATGGTCTAGTCAGAGAAGAGCCTAGCTATATGACCTGGTATGTGTAAATA
TATTTTCAGACTGAGCCTTATTTCTGGAAGCATAGGGCTAGGAGGAAGAG
CCAGTCATAACTTGTACAATGGGTACTATCGTGTTTATTATTATAAGATA
AAGAACCTGTTTATTTAGACAAAAGTGGGGGGGTGATTGTTGAGGTTTGG
TCTGTTGTTATGTATTTTAAGGNTAANTTCTGCACCAGGACGCCTAGTTA
TGTACCAGTGAGTTATCATGTTTACCAGCTTTTGTTGTGCAAACACTGTT
CTGTAATTCCAACTTATTGGTTAAATAAAAACACTACAGCCAATTACAGG
TTTTGAGTTACCAGGCTGGTGGGTGTACAGAGAATAATGAATAAGGTTAT
AAATAGGCGACTCGGCCTCTTTATGAATAATGAACCTCTTGTCACTGTGA
TGGTCGTATCTCTCTTTTTTTGGTGCCCTATGTCTCAACACCTTTGCCCT
TCTATAAATTTCATCATTACGCTCATCCTCTTTCTTTCCGTATTTTCCCA
CTTCTT

Query= MSMg01no407_f09.b1 MSMg01no407_f09.b1 CHROMAT_FILE:
MSMg01no407_f09.b1 PHD_FILE: MSMg01no407_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:57 2005
         (619 letters)



>mm_chr5_81870850_81871868
          Length = 1019

 Score = 1106 bits (572), Expect = 0.0
 Identities = 605/616 (98%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccattcatgcccaaagctattttaatcacacctatacccttttctccccatgac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccattcatgcccaaagctattttaatcacacctatacccttttctccccatgac 263

                                                                       
Query: 64  ttgattgtatccacttcctactccatatctccttgcaactttgtgtcctcttatttgtgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgattgtatccacttcctactccatatctccttgcaactttgtgtcctcttatttgtgc 323

                                                                       
Query: 124 tgtagctaaacttgtaggtgtgggatcatctgcagtttaccacagaccacactctgaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtagctaaacttgtaggtgtgggatcatctgcagtttaccacagaccacactctgaagg 383

                                                                       
Query: 184 agaactgactctctatccccaagatgatgtgaccagcttctcagctaagggtgggggtgc 243
           ||||||||||||| |||| | ||||||| | ||||||||||||||||||||||||| |||
Sbjct: 384 agaactgactctccatccgcgagatgatatcaccagcttctcagctaagggtgggg-tgc 442

                                                                       
Query: 244 ctgtgcctttctctgttctgtattggaacttcgacttgccttgatcttgtgcaggcaatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 443 ctgtgcctttctctgttctgtattggaacttcgacttgccttgatcttgtgcaggcagtc 502

                                                                       
Query: 304 acagctgcagagagttcatgagagaagaggtcccattatgtccagaagacacccttccag 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acagctgcagagagttcgtgagagaagaggtcccattatgtccagaagacacccttccag 562

                                                                       
Query: 364 tcttccccgagttctggttcttctctttcagttcctctcccactgtgataactgagccat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcttccccgagttctggttcttctctttcagttcctctcccactgtgataactgagccat 622

                                                                       
Query: 424 cagagaggagtgtaacacagatgtcctgtttggggctacagtccatcaaatactctagag 483
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagagaggagtgcaacacagatgtcctgtttggggctacagtccatcaaatactctagag 682

                                                                       
Query: 484 cttactacctttagagacagaaatatatttacatatggaaggaaggattcttatgtattt 543
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 683 cttactacctttagagacagaaatatatttatatatggaaggaaggattcttatgtattt 742

                                                                       
Query: 544 aatccagaatccaagtgcgtagcttttaagagtgggagaattaactctgctttttttctt 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 743 aatccagaatccaagtgcgtagcttttaagagtgggagaattaactctgcttttttcctt 802

                           
Query: 604 tttgttgttttgaaga 619
           ||||||||||||||||
Sbjct: 803 tttgttgttttgaaga 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)