Query= MSMg01no407_g17.b1 MSMg01no407_g17.b1 CHROMAT_FILE:
MSMg01no407_g17.b1 PHD_FILE: MSMg01no407_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:03 2005
(646 letters)
>mm_chr5_71859828_71860873
Length = 1046
Score = 1189 bits (615), Expect = 0.0
Identities = 635/642 (98%)
Strand = Plus / Plus
Query: 5 gaattcacatatattaaaagtaataaaatttanaacaaataattcagtaattacaatctt 64
||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 205 gaattcacatatagtaaaagtaataaaatttaaaacaagtaattcagtaattacaatctt 264
Query: 65 ttaccaccaccaccagttaattttaatgcaaccttaatacatgggatttttctgtaaaca 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaccaccaccaacagttaattttaatgcaaccttaatacatgggatttttctgtaaaca 324
Query: 125 ggattagtggaggagtgtagaaagtaagtacaattttaaaattaaattttatggtagtta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggattagtggaggagtgtagaaagtaagtacaattttaaaattaaattttatggtagtta 384
Query: 185 cttcaaaccaacagagttacttttaaaggctctatgatcagagcaacaacatttcacatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcaaaccaacagagttacttttaaaggctctatgatcagagcaacaacatttcacatc 444
Query: 245 atcatttttgttcacatttatcctaaaaggataaatattacagtcattaatttcccctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcatttttgttcacatttatcctaaaaggataaatattacagtcattaatttcccctta 504
Query: 305 tcaaaatatagtaatacataaattgtaaaaactgggttttcttctcaatttttacattat 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaaaatatagtaataaataaattgtaaaaactgggttttcttctcaatttttacattat 564
Query: 365 tgatagtttctcccagcaatgctgcatttagacattaatttatgcagatttttgtttcat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatagtttctcccagcaatgctgcatttagacattaatttatgcagatttttgtttcat 624
Query: 425 tatttttacaaccatccaaccaagatgttcatagatcaaaaaaataaacactgtatataa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatttttacaaccatccaaccaagatgttcatagatcaaaaaaataaacactgtatataa 684
Query: 485 aattcaattataagtgacctacttagataatttctccatgttactctcaaattaaaaaat 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 aattcaattataagtgacctacttagataatttatccatgttactctcaaattaaaaaat 744
Query: 545 aaacatttaatgctaatgcgtgggatgaaacatatagaagcaggagacatttttaaatat 604
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaacatttaatgctaatgcgtgtgatgaaacatatagaagcaggagacatttttaaatat 804
Query: 605 agcttatgccttgaatatttaatcacataagctgatgatcca 646
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agcttatgccttgaatatttaatcacataagctgatgatcca 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_g17.g1 MSMg01no407_g17.g1 CHROMAT_FILE:
MSMg01no407_g17.g1 PHD_FILE: MSMg01no407_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:03 2005
(305 letters)
>mm_chr5_72049516_72050224
Length = 709
Score = 505 bits (261), Expect = e-147
Identities = 293/307 (95%), Gaps = 8/307 (2%)
Strand = Plus / Minus
Query: 5 agttccattctga---agaagggtttcaagaagtagcagtctgtttgcccatagttcccg 61
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agttccattctgaaggagaagggtttcaagaagtagcagtctgtttgcccatagttccca 450
Query: 62 ggtagagttgcaaggggaggggttggaggggtgggacacaagtgtgccttgagtcgggta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggtagagttgcaaggggaggggttggaggggtgggacacaagtgtgccttgagtcgggta 390
Query: 122 gggcaaagagggaaaatctgttatctttaaaaca---ctctccccacagataccttcaca 178
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 389 gggcaaagaaggaaaatctgttatctttaaaacagttctctccccacagataccttcaca 330
Query: 179 gtattctccttaactgtccaacagtttggcaagtctgcccaggtagtagaatctcccctt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 329 gtattctccttaactgtccaacagtttggcaagtctgcccaggtagtagaatcttccctt 270
Query: 239 cccttatttgtcaggccgcccagcatcctgccccccccctgccctcctccgtcccgcctg 298
|||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct: 269 cccttagttgtcaggccgcccagcatcctgccccccc--tgccctcccccgtccctcctg 212
Query: 299 ccccgtc 305
|||||||
Sbjct: 211 ccccgtc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 709
Length adjustment: 9
Effective length of query: 296
Effective length of database: 700
Effective search space: 207200
Effective search space used: 207200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
