Query= MSMg01no407_h15.b1 MSMg01no407_h15.b1 CHROMAT_FILE:
MSMg01no407_h15.b1 PHD_FILE: MSMg01no407_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:08 2005
(577 letters)
>mm_chr5_90779080_90780057
Length = 978
Score = 1062 bits (549), Expect = 0.0
Identities = 566/575 (98%), Gaps = 7/575 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctcc-aatattacagtttcaaaaatgtatgttgccacgaatagtaaagtaag 62
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattctctccaaatattacagtttcaaaaatgtatgttgccaccaatagtaaagtaag 263
Query: 63 agttaaaaaccagagcatggggctaacaagatgctcagtagcagatgaaggtgctggatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttaaaaaccagagcatggggctaacaagatgctcagtagcagatgaaggtgctggatg 323
Query: 123 gccatgtaagcatgatctaaaggctgaggcccacataaaggctgagaaagtggaccccac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccatgtaagcatgatctaaaggctgaggcccacataaaggctgagaaagtggaccccac 383
Query: 183 aaaacgtcctgacctctttacacacttacacacacacacacacacagaaactgatactaa 242
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 384 aaaacgtcctgacctctttacacactt------acacacacacatagaaactgatactaa 437
Query: 243 ataagaagcatcaggaactactttttaaacatctccatttatgcaaaacaaaacttttga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ataagaagcatcaggaactactttttaaacatctccatttatgcaaaacaaaacttttga 497
Query: 303 ttctataaatgttatttatacacatgtaagaaaatgtagaggaaaaggtagaaaataaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttctataaatgttatttatacacatgtaagaaaatgtagaggaaaaggtagaaaataaag 557
Query: 363 cttaaaaacatacctgatatataattattattattattctctattttactctactgtttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttaaaaacatacctgatatataattattattattattctctattttactctactgtttt 617
Query: 423 gatctttcagacaacatttactatgtaacctaacaaagaaagttaatatatctttaagat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gatctttcagacaacatttactatgtaacctaacaaagaaagttaatatatctttaagat 677
Query: 483 tgcaacaacataaaattgaatgctaccaacaatttcatatttctggtagaaacttttaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgcaacaacataaaattgaatgctaccaacaatttcatatttctggtagaaacttttaaa 737
Query: 543 aggttttctttgaaggatgttgtcctattccctcc 577
|||||||||||||||||||||||||||||||||||
Sbjct: 738 aggttttctttgaaggatgttgtcctattccctcc 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_h15.g1 MSMg01no407_h15.g1 CHROMAT_FILE:
MSMg01no407_h15.g1 PHD_FILE: MSMg01no407_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:08 2005
(446 letters)
>mm_chr5_90946543_90947389
Length = 847
Score = 806 bits (417), Expect = 0.0
Identities = 436/447 (97%), Gaps = 9/447 (2%)
Strand = Plus / Minus
Query: 1 tggggctatactgagatcttgactctgtatgttgaatcttttttcagtccatagaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tggggctatactgagatcttgactctgtatgttgaatcttttttcagtccatagaattat 493
Query: 61 ctgtggtcctgccatgcctggccttcagtatgttgagctgtatccttttcgcagttgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctgtggtcctgccatgcctggccttcagtatgttgagctgtatccttttcgcagttgatt 433
Query: 121 tgaattatttggtcaggaatggatgtttaaactcaccaagccatttcctgggtctttcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaattatttggtcaggaatggatgtttaaactcaccaagccatttcctgggtctttcga 373
Query: 181 gatgctcacaagggttgtgttctttttctgtattgcagtgtgccatctttatgactgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 gatgctcacaagggttgtgttctttttctgtattgcagtgtgccatctttattactgtgt 313
Query: 241 gtgtgctcagacatttttcatcgctaaagaaaacctcgctggatcacagtgactgatgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtgtgctcagacatttttcatcgctaaagaaaacctcgctggatcacagtgactgatgct 253
Query: 301 tttgacgtgc-gctgaaatccacttcctcaggaaccttgctaagggttttttgttttttt 359
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 252 tttgacgtgctgctgaaatccacttcctcaggaaccttgctaaggg--------tttttt 201
Query: 360 tttctcacaggattaccagaccataatttttttcagtgtacttcagtggcttcggtacca 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 tttctcacaggattaccagaccataatttttttcagtgtacttcagtggctttggtacca 141
Query: 420 ggttaatgtggggtccttataaaaaat 446
|||||||||||||||||||||||||||
Sbjct: 140 ggttaatgtggggtccttataaaaaat 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space: 364932
Effective search space used: 364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
