NTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTAGATATGAAGAGACTTGGGGGAGGGTCCCCTACTTACACC
TGAAGAGGGAGTGAAGCTCATTGGCACCAGAATCTCGGGCTACTGCATAA
ACAGGTGGTCCATCAGACTGGCAGTGATTCCTTCAGTTGTCCTGCAGGTT
TTCATGGCATCCTGGATGATGTCACTAGAGTAGACATCATCAGATCAACC
TCAAATCAATGTGTGACTATGAAAATGTGAGGAGAAGAATCAAGGTGGGA
ACTCAAGTCTTCCATCTCAGTCTGAGGCATGAGGCCTATTGGAAACTGTA
AAATCTTTCAGAGAAAAATGTGACACTACAGAAATATTTGGGAGACTTTG
ACTAATATAGGGTAAAGTTGCAGATGCTTCATGGCATGGACTTGGGATGG
GGACAACCAACTTTCACACCTTGAATAATGAGTAATGTGAAAACAAAGAT
GGACCCAAACTGGTTGTCAGTGTATCTTGTCATGGGAATAGCAGACAGGC
CCCGTGGGAATAGCAGACAGGAAACTAAGCCACATATAAGCAAGATAAAC
AGAGCTTCTGTGTAGGGACATCAACTTGGTGGGTTCATTAATGTGCACCT
ACTCGAGTAGCAACTAAGGGGATACCATGATCCAGTGGGAGCCCAAGCAT
TACTGGTCAAAAGGCAGCAGCAGGC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTCCTGAGCAGTCACTGGAAAC
CGCAAAAGCCATCAAGGTAAAAACAGAAGGGAACCTGGCTGGTTTGGGGG
TGGAGGGAGATGGTGCTTGGACGTTTCCCTCATGCCACTGGCCCTCCTGC
TCCCTTTCTATCCCTGGAATGTGTTTCTTNNNNNNCTATAGNNTGNNNNC
GNNNNNCCCAAGGNNNNNNCCCCNNNCCAATCAANNAGTGTCGGGGGGGG
GGGGCTGGGGNTGGGACTNNNACGNNTCTGGAAGNNNNNTGGGGGGGGGG
GGCGTGGGGGGGGGGGGGTCTAAAAAAAAAAAAAAAAANANNNTTTTTTT
AAAAAAAAGGTGGGGGAATCTAAANNNNCCTAAANNAANNNANNNGGGGG
GGGGGGGGGGGCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGGGGTTTTTTTTCTGANAAANAAACAAAAAAAAAAAAAAAAAAAAAA
NNANNAAANAAAAAAAAAAAANNNANNNNAAAAAANANAAAAAAAAAAAA
GGGGGTGGTGTAAACATANANAANAAAAAAAAAAAAAATAAANNAATTAN
AAAAAAANAAAAANAAAAATAAAAAAAATTAAAAATAAAAAAATTANNAA
AAAATNTTTNAAANAATTTATTTTATATTTTTTTGTTGGTTT

Query= MSMg01no407_j19.b1 MSMg01no407_j19.b1 CHROMAT_FILE:
MSMg01no407_j19.b1 PHD_FILE: MSMg01no407_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:18 2005
         (676 letters)



>mm_chr5_25372529_25373604
          Length = 1076

 Score = 1183 bits (612), Expect = 0.0
 Identities = 657/672 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtagatatgaagagacttgggggagggtcccctacttacacctgaagagggag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaattcagtagatatgaagagacttgggggagggtcccctacttacacctgaagagggag 817

                                                                       
Query: 65  tgaagctcattggcaccagaatctcgggctactgcataaacaggtggtccatcagactgg 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 816 tgaagctcattggcaccagaatctcgggctactgcataaacaggtcgtccatcggactgg 757

                                                                       
Query: 125 cagtgattccttcagttgtcctgcaggttttcatggcatcctggatgatgtcactagagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cagtgattccttcagttgtcctgcaggttttcatggcatcctggatgatgtcactagagt 697

                                                                       
Query: 185 agacatcatcagatcaacctcaaatcaatgtgtgactatgaaaatgtgaggagaagaatc 244
           |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct: 696 agacatcagcagatcaacctcaaatcaatgtgtgaccatgcaaatgtgaggagaagagtc 637

                                                                       
Query: 245 aaggtgggaactcaagtcttccatctcagtctgaggcatgaggcctattggaaactgtaa 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaggtgggaactccagtcttccatctcagtctgaggcatgaggcctattggaaactgtaa 577

                                                                       
Query: 305 aatctttcagagaaaaatgtgacactacagaaatatttgggagactttgactaatatagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aatctttcagagaaaaatgtgacactacagaaatatttgggagactttgactaatatagg 517

                                                                       
Query: 365 gtaaagttgcagatgcttcatggcatggacttgggatggggacaaccaactttcacacct 424
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 516 gtaaagttgcagatgcttcatggcatagacttgggatggggacaaccaactttcacactt 457

                                                                       
Query: 425 tgaataatgagtaatgtgaaaacaaagatggacccaaactggttgtcagtgtatcttgtc 484
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 456 tgaataatgagtaatgagaaaacaaagatggacccaaactggttgtcagtgtatcttgcc 397

                                                                       
Query: 485 atgggaatagcagacaggccccgtgggaatagcagacaggaaactaagccacatataagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgggaatagcagacaggccccgtgggaatagcagacaggaaactaagccacatataagc 337

                                                                       
Query: 545 aagataaacagagcttctgtgtagggacatcaacttggtgggttcattaatgtgcaccta 604
           |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aagatagacagagcttctttatagggacatcaacttggtgggttcattaatgtgcaccta 277

                                                                       
Query: 605 ctcgagtagcaactaaggggataccatgatccagtgggagcccaagcattactggtcaaa 664
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 276 ctcgagtagcaactaaggggataccgtgatccagtgggagcccaagcattactggtcaaa 217

                       
Query: 665 aggcagcagcag 676
           ||||||||||||
Sbjct: 216 aggcagcagcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)