BAC Information

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BAC

Clone NameMSMg01-407J20
Chromosome5 (Build37)
Map Location 97,553,353 - 97,553,861
singlet/doubletsinglet
Overlap genenone
Upstream geneCnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3
Downstream geneLOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407J20.T7 (MSMg01no407_j20.b1)MSMg01-407J20.TJ (MSMg01no407_j20.g1)
ACCAG505532AG505533
length732722
length of high quality
(start - end)		516 (50 - 565)39 (88 - 126)
definitionCHROMAT_FILE: MSMg01no407_j20.b1 PHD_FILE: MSMg01no407_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:18 2005CHROMAT_FILE: MSMg01no407_j20.g1 PHD_FILE: MSMg01no407_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGACTAACAAATAAGAAGTTTCAAAGAAAAAAAATAGTTT
TGTATCCCAAATTCTTCACTATTTTGTTTTCTTTACATTAATATTGTTCG
CTAATTTTAAGAGGGCCCATTGACTGCACCTGATAAATATTTGACATCAC
TGGCTTTATTTAACTAACTCTCTCCAGTCTCTTAAACCAGGGGATCTCAT
CAGACTTGAACAAACTTGTCAATGAGGCATTTATTCATCAGGAACTTAAA
GATGCCACAGAAGAAGGAACTGAACATTATCAATGTCTTTTCTACAGCCA
GTACTTGGTGTATGTTTTCATTTGATACCCTCGACAAGTCATTAAGTTGC
TTGGAATGAAGCTCACTTAGCAGAAAGAAGACGCAAAGCTTCATTTATAG
GCAGCCACAGAGGTAATTCTCAGACTCGTCTGGGCATAGAACCCATGCTC
CCTCCATGATGCTGGAAAATGTTGGTAAGTGCTGGCTATGGTTTTAAAAT
TAAGATAGATCTGAGGCTGAGATCTGATGCTACCAAGATGAGTGCCGAGA
TAGAGAAGAAGCACATAGATTAACAGACAAGGCCTCCCTCTGTAGCTGAG
GCTGGNCTGGAACACACAGAAATCCCCAATCTCTGCCTCCCTAAATCTGG
GAATACAGGGTAAGTCAATAAAACTGGGGGTT

CATTGCTTTGNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAAAGATTAACACAAGGGCAGCGAAGG
AGAGGGAGGGAAGGAGAGAGGGAGGGAGGNANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCNNNNNNNNNNCCNNNNNNNNNCNNNNNNN
NNNCTTTTNCATGNNNNNNNNNNNGGGCGCCTGGGGTTTCCCTCTTGTGT
TCTTTTTTTTTGTGCTGGGTGGGGTGCTGGTTGGGGGTTCTTCTTTCTGT
TTTGGCTGGGGGGGGTTGGGGGGGGTGGGGGGGGTTGGGGGGTCTGGGGT
GGGGGGGGTGGGTTGGGGGGGTTTTTTTGGGGGGGTCTGGGGGGGGGGGG
GGGGTGGGGGANNCCTTTNNNANNNNNNNNAAATTATTTTTGTTTANNNC
CTTTTNNANNNNNNNNNNNNANNNNNNNNNNNNNNNANNNATTATTTTTT
TTTTTTTTNNNNTCCCCNNNANNNAANANANNNNNANNNANANAAANNNA
ANNNAAAAANANNANNAAAAAAAAAAANNNNAAANNNANANNNNNNAAAA
AAATTGGGTTTTTTTTTTTTTTTTTCNTCTANNANNNNANAAANAAAATA
ANAANATATTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_j20.b1 MSMg01no407_j20.b1 CHROMAT_FILE:
MSMg01no407_j20.b1 PHD_FILE: MSMg01no407_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:18 2005
         (516 letters)



>mm_chr5_97553149_97554061
          Length = 913

 Score =  868 bits (449), Expect = 0.0
 Identities = 496/513 (96%), Gaps = 5/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgactaacaaataagaagtttcaaag-aaaaaaaatagttttgtatcccaaat 63
           |||||||||||||| ||||   ||||||||||| ||||||||||||||||||||||||||
Sbjct: 713 gaattcatgactaagaaat---aagtttcaaagaaaaaaaaatagttttgtatcccaaat 657

                                                                       
Query: 64  tcttcactattttgttttctttacattaatattgttcgctaattttaagagggcccattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcttcactattttgttttctttacattaatattgttcgctaattttaagagggcccattg 597

                                                                       
Query: 124 actgcacctgataaatatttgacatcactggctttatttaactaactctctccagtctct 183
           |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 596 actgcacctgatgaatatttgatatcactggctttatttaactaactctttccagtctct 537

                                                                       
Query: 184 taaaccaggggatctcatcagacttgaacaaacttgtcaatgaggcatttattcatcagg 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 taaacc-ggggatctcatcagacttgaacaaacttgtcaatgaggcatttattcatcagg 478

                                                                       
Query: 244 aacttaaagatgccacagaagaaggaactgaacattatcaatgtcttttctacagccagt 303
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 477 aaattaaagatgccacagaagaaggaactgaacattatcaatgtcttttctacagccaat 418

                                                                       
Query: 304 acttggtgtatgttttcatttgataccctcgacaagtcattaagttgcttggaatgaagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acttggtgtatgttttcatttgataccctcgacaagtcattaagttgcttggaatgaagc 358

                                                                       
Query: 364 tcacttagcagaaagaagacgcaaagcttcatttataggcagccacagaggtaattctca 423
           ||||||| ||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct: 357 tcacttaacagaaagaagacgcaaagcctcgttcataggcagtcacagaggtaattctca 298

                                                                       
Query: 424 gactcgtctgggcatagaacccatgctccctccatgatgctggaaaatgttggtaagtgc 483
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gactcatctgggcatagaacccatgctccctccatgatgctggaaaatgttggtaagtgc 238

                                            
Query: 484 tggctatggttttaaaattaagatagatctgag 516
           |||||||||||||||||||||||||||||||||
Sbjct: 237 tggctatggttttaaaattaagatagatctgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 913
Length adjustment: 10
Effective length of query: 506
Effective length of database: 903
Effective search space:   456918
Effective search space used:   456918
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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