BAC Information

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BAC

Clone NameMSMg01-407K04
Chromosome5 (Build37)
Map Location 134,252,153 - 134,417,674
singlet/doubletdoublet
Overlap geneLOC666038, LOC100039750
Upstream geneLOC100039731
Downstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407K04.T7 (MSMg01no407_k04.b1)MSMg01-407K04.TJ (MSMg01no407_k04.g1)
ACCAG505548AG505549
length762768
length of high quality
(start - end)
451 (43 - 493)524 (73 - 596)
definitionCHROMAT_FILE: MSMg01no407_k04.b1 PHD_FILE: MSMg01no407_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:19 2005CHROMAT_FILE: MSMg01no407_k04.g1 PHD_FILE: MSMg01no407_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,417,338 - 134,417,674)(134,252,153 - 134,252,676)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCAAAATGACAAACCAACAAGCACCAAGTGTTTGCCTCTTTGTTCCA
CAGATGCCAGAATTACAAATGTGCATCATGTGTGGCTTTAAAAAAATTAA
ACTTATATTCTTGTGCATATAAGATGTTTTAGCTAGTGTTAACTGTCAGC
TTGACATAGCCTAGAGTCACCAGATCAGGTGGACTTATAGGAGTGTCTTT
TGGAATTTGTCTTGATTGTTAATTGATGTAGGAGCGTCCATCCCACTGTG
GGTGGCACTATTCCCTATGCAAGTGGTTCTGGGCTATATAAGGAGTATGT
TTAAGTACAAGCTTGTGAATATTCCTTTGTGGGTTCTGCTTCAAGTTCTT
GCTTCAGTTCCTTCCCTGACTTCATCACTGATGGAGTGTGATCTGGAAAT
GTAAGCTGAATGAGCCCTGTCCTCCCCCCTAAGTTGCCATTAGCTAGTGT
TTTATCAGAGAGGCAGAGAAGAAACTCAATTATCAACTCAACAATCTCTC
TGCCCCCCTACTCCAACCCCTGTCTTCTTTCTTAAGAATTTTCTTTTTGA
GCAAATACATTTTGAAAGGTTGAACCTGGTACCTATTCCCAAGACTCCAC
ATATTCTGTTTGTAAACACAAAACGCCTTACATAAATATTTACATACCTT
GCCGCTGACTGATAACTATGTCATCCCCTTGCGAAATTAACCCCCGTAAT
CCCCCCCCAACA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAAACTCACCATCTAGACAACTTCAG
TCTGTCACTGACTACCTATCTGGGGTGAATACACCTTTGGTCATATCTTC
CTAGGAGAAGTCTCACAACACTGTCTTCTTCACCATGTGCAAAATTCTAT
ATCCACTTATTCTTCTCAGGTATAAGATCTGTTGTTGTCCAAGGGGCACT
CAGGAGTGTTTCTTCATGCTGGTTATGAGGTTGTAGAGGATTCTGTCTCT
TTATGTGGCTTGCCTTTTAAATCTTAAGTATTGGTACTATGTGGAAGCAT
GAGAGAAAGGTATACAACATGTATTATCTATCTTCCTGTTCAGACTTACA
GAAGAAAGTTTTGCTACATGGAAGCAGAAAGGAACTGACAACTAAAGCCT
CAGAGGTTATTTCAAGAGTGACTTGGCAAAACAGCATTGTTCAATTCTGC
CACTAATGAAGTCTCAGAACATAAAGTGAGACACAGAGATGCAGAACACT
TGCTACCATGGCAGTTCAAGGAGGCTTTGGCAGAGCTCCAAATAGTATCC
ATGGCATAGAAATGAGTCCTCTCCTGGGGAATATCAGCTTCTATAAAAAC
ATGACTCCTTCTGGAGATGCAGCAATTTGGAAGAAATTTCTTGAACATGC
TCTTTTCTGGAATCTGGTGCAGCCACTTTTTGCTCCTGGAAAGAAATGGC
AACAACTATGGAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_k04.b1 MSMg01no407_k04.b1 CHROMAT_FILE:
MSMg01no407_k04.b1 PHD_FILE: MSMg01no407_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:19 2005
         (451 letters)



>mm_chr5_134417338_134418188
          Length = 851

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccaaaatgacaaaccaacaagcaccaagtgtttgcctctttgttccacagat 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggaattcaccaaaaggacaaaccaacaagcaccaagtgtttgcctctttgttccacagat 278

                                                                       
Query: 64  gccagaattacaaatgtgcatcatgtgtggctttaaaaaaattaaacttatattcttgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gccagaattacaaatgtgcatcatgtgtggctttaaaaaaattaaacttatattcttgtg 218

                                                                       
Query: 124 catataagatgttttagctagtgttaactgtcagcttgacatagcctagagtcaccagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 catataagatgttttagctagtgttaactgtcagcttgacatagcctagagtcaccagat 158

                                                                       
Query: 184 caggtggacttataggagtgtcttttggaatttgtcttgattgttaattgatgtaggagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 caggtggacttataggagtgtcttttggaatttgtcttgattgttaattgatgtaggagc 98

                                                                       
Query: 244 gtccatcccactgtgggtggcactattccctatgcaagtggttctgggctatataaggag 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 97  gtccatcccactgtgggtggcactattccctaggcaagtggttctgggctatataaggag 38

                                                
Query: 304 tatgtttaagtacaagcttgtgaatattcctttgtgg 340
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  tatgtttaagtacaagcttgtgaatattcctttgtgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no407_k04.g1 MSMg01no407_k04.g1 CHROMAT_FILE:
MSMg01no407_k04.g1 PHD_FILE: MSMg01no407_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:20 2005
         (524 letters)



>mm_chr5_134251953_134252876
          Length = 924

 Score =  959 bits (496), Expect = 0.0
 Identities = 517/524 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaactcaccatctagacaacttcagtctgtcactgactacctatctggggtgaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaactcaccatctagacaacttcagtctgtcactgactacctatctggggtgaatac 260

                                                                       
Query: 61  acctttggtcatatcttcctaggagaagtctcacaacactgtcttcttcaccatgtgcaa 120
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctttgttcacatcttcctaggagaagtctcacaacactgtcttcttcaccatgtgcaa 320

                                                                       
Query: 121 aattctatatccacttattcttctcaggtataagatctgttgttgtccaaggggcactca 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattctatattcacttattcttctcaggtataagatctgttgttgtccaaggggcactca 380

                                                                       
Query: 181 ggagtgtttcttcatgctggttatgaggttgtagaggattctgtctctttatgtggcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagtgtttcttcatgctggttatgaggttgtagaggattctgtctctttatgtggcttg 440

                                                                       
Query: 241 ccttttaaatcttaagtattggtactatgtggaagcatgagagaaaggtatacaacatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttttaaatcttaagtattggtactatgtggaagcatgagagaaaggtatacaacatgt 500

                                                                       
Query: 301 attatctatcttcctgttcagacttacagaagaaagttttgctacatggaagcagaaagg 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatctatcttcctgttcagacttacagaagaaagttttgctacatggaagcagaaagg 560

                                                                       
Query: 361 aactgacaactaaagcctcagaggttatttcaagagtgacttggcaaaacagcattgttc 420
           |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 561 aactgacaacaaaagcctcagaggttatttcaaaagtgtcttggcaaaacagcattgttc 620

                                                                       
Query: 421 aattctgccactaatgaagtctcagaacataaagtgagacacagagatgcagaacacttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattctgccactaatgaagtctcagaacataaagtgagacacagagatgcagaacacttg 680

                                                       
Query: 481 ctaccatggcagttcaaggaggctttggcagagctccaaatagt 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaccatggcagttcaaggaggctttggcagagctccaaatagt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)