BAC Information

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BAC

Clone NameMSMg01-408A11
Chromosome5 (Build37)
Map Location 123,579,564 - 123,580,048
singlet/doubletsinglet
Overlap geneRhof
Upstream geneCcdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593
Downstream gene4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408A11.T7 (MSMg01no408_a11.b1)MSMg01-408A11.TJ (MSMg01no408_a11.g1)
ACCAG505843AG505844
length752752
length of high quality
(start - end)		483 (70 - 552)487 (76 - 562)
definitionCHROMAT_FILE: MSMg01no408_a11.b1 PHD_FILE: MSMg01no408_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:52 2005CHROMAT_FILE: MSMg01no408_a11.g1 PHD_FILE: MSMg01no408_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGACTTCCACCATCGCAAAAACTCTCTGCATCTGGCAACCTT
ACCAGCCACTGCTAGAGCACGAGGCAAATCATAGTCAGCGGCTGTGGGCA
GCCTGAAGCAGCCCCATATCACACACTTGGGGTTAAAACAAAAAACATAT
TCTCGTAATATTTCTGAGTTTTTCAAAGAAACCTGTCTTAAGGTTTTGCT
GCTGTGTCCAGACACCATGACCGAGGCAACTCTGACAAGGACAACGTTTA
ATTGGGGCTGGCTTACAGGTTCTTAGGTCCAGTCCATTATCATCAAGGCA
GAAGCATGGCAGTGTCCAGGCAGGCATGGTGCAGGTGGAGCTGTGAGTTC
TACATCTTGCTCTAAAGGCTGCTAGGAGAAGACTGGCTTCCATTCAGCTA
GGACAAGGGTCTTAAAGCTCTCGCTCACAGTGACACATTTCCTCCAACAA
GGCCACACCTCTAGATAGTGCCACTCCCTGGGCCAAGCATAGTCAAACCA
CCACAGAACCGAAACTCCAAAACTGTTGCTATAGCTTATTGGTAGGGTGC
TTACTTAAATATGTCAAGCCCTAAGTTCTGTCTGCAGCACAGAAAAAAGG
GGGGAACCTTATATTCTGGAGCCCGTGATTGGTATCCCCAAGTATGAATA
AAAAAGGGCCCCGCCCCCTGGTTTTTTAACCCCCTATTCCCACGGTTATT
TA

CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTATTCCACAGAATCTTCTAGAG
CCTCCTCCGGACAAACCCTGTGCACACACGAGAGGAATGACCCAGCCTCA
CAAGCACACTGCTCTCTGGCCAGGGAATTTCCTCCTGCCATTAGAATTTC
CCTAGTCAGCGAGGGACATTCTTGAGGGCCCATCTAGATTCTCCATCAGA
AAAGTGTGTGTGTGGCCCGTCTAGATTTCCTGCAGAAAGAGATGGGGCCA
GAGCCATGTGTGGTGGTGCATACCTCAGGAGGCTGAGGTAGCATCAGAGG
GCAGGGTGGACTACTCAGGATGTTTTGAGGCTAGGAAGAGGAACAGAGAC
CCTATCTCAAACAGACAGACTCACTCAGATGGAGGGCCTGGGGATGTAGC
TCAGGGTAGACCTTAGTTATGCATAAGAGCCTGATTTCCAGCCCTAGCAC
AAAACAAAGAAGTCTAAAGAACGGTATATGCTGAGCAGCCCAAGAGCCAG
TCCCTGCGCTGCTGTGTATATGGAATTTGATTTAATTCCCTTGACTCTTA
NCTCTGAAGAAAGATGAGAATGAGGCTCACAAACCTTCAGTGGCACAACC
AGTGAACTCCAGGCAGAGTCTCTCCCGGTCTGTTTCTCCACCCGAAACAT
AAAAGCTTAGAACAGATTTTTAACCCAGGATTCTCCCCACCCCCTGATGA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_a11.g1 MSMg01no408_a11.g1 CHROMAT_FILE:
MSMg01no408_a11.g1 PHD_FILE: MSMg01no408_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:52 2005
         (487 letters)



>mm_chr5_123579364_123580248
          Length = 885

 Score =  899 bits (465), Expect = 0.0
 Identities = 481/487 (98%), Gaps = 2/487 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttattccacagaatcttctagagcctcctccggacaaaccctgtgcacacacgagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttattccacagaatcttctagagcctcctccggacaaaccctgtgcacacacgagagg 260

                                                                       
Query: 61  aatgacccagcctcacaagcacactgctctctggccagggaatttcctcctgccattaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgacccagcctcacaagcacactgctctctggccagggaatttcctcctgccattaga 320

                                                                       
Query: 121 atttccctagtcagcgagggacattcttgagggcccatctagattctccatcagaaaagt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttccctagtcaccgagggacattcttgagggcccatctagattctccatcagaaaagt 380

                                                                       
Query: 181 gtgtgtgtggcccgtctagatttcctgcagaaagagatggggccagagccatgtgtggtg 240
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtg--gcccgtctagatttcctgcagaaagagatggggccagagccatgtgtggtg 438

                                                                       
Query: 241 gtgcatacctcaggaggctgaggtagcatcagagggcagggtggactactcaggatgttt 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 439 gtgcatacctcaggaggctgaggtagcatcagagggcagggtgggctactcaggatgttt 498

                                                                       
Query: 301 tgaggctaggaagaggaacagagaccctatctcaaacagacagactcactcagatggagg 360
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 499 tgaggctaggaagaggaacagagaccctgtctcagacagacagactcactcagatggagg 558

                                                                       
Query: 361 gcctggggatgtagctcagggtagaccttagttatgcataagagcctgatttccagccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcctggggatgtagctcagggtagaccttagttatgcataagagcctgatttccagccct 618

                                                                       
Query: 421 agcacaaaacaaagaagtctaaagaacggtatatgctgagcagcccaagagccagtccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcacaaaacaaagaagtctaaagaacggtatatgctgagcagcccaagagccagtccct 678

                  
Query: 481 gcgctgc 487
           |||||||
Sbjct: 679 gcgctgc 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 885
Length adjustment: 10
Effective length of query: 477
Effective length of database: 875
Effective search space:   417375
Effective search space used:   417375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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