BAC Information

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BAC

Clone NameMSMg01-408D01
Chromosome5 (Build37)
Map Location 98,988,853 - 99,185,036
singlet/doubletdoublet
Overlap gene1700007G11Rik
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408D01.T7 (MSMg01no408_d01.b1)MSMg01-408D01.TJ (MSMg01no408_d01.g1)
ACCAG505966AG505967
length741743
length of high quality
(start - end)		629 (32 - 660)551 (74 - 624)
definitionCHROMAT_FILE: MSMg01no408_d01.b1 PHD_FILE: MSMg01no408_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:05 2005CHROMAT_FILE: MSMg01no408_d01.g1 PHD_FILE: MSMg01no408_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,184,423 - 99,185,036)(98,988,853 - 98,989,403)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCACTGAAGTCTTCTGAAGATCAAACCAAATGCAATTAATTATAAGTAA
TTAAGCAGTGGGGAGAAACCCAGGTTCAACCAGTGAGATCGATCTGAATT
GTAATGTATGACCAATACTATAGATATTTAAGTAACAGATTACAGGTTTT
GTACTTTTAAACTTGAGAGAAAAGTGAGATATAACAAAATTGCCTGCTTG
TACCACATAAGACAAAACTTCAACCCAGGCAGAGACTTTCCCAAGGCATG
GTGACCTAAGCGCCACTGGACCATGCAATCGGTAAAACTGTCGTGCGTCA
GGGCCTTTGATTGGCACGCTCACTCTCGCTTCTCTGACGCATGCAGGATT
TATCTACTACCTGAAATCAAGTTACCATTTCACAGACATATTGTCCACAA
TAATACGTTCCCTGTGCATTTTCTAACTTAGTGAGTGTCTGGGATCATGA
GGAGATCAGCAGAGGAATTGGCAAGAGCAGAGAAATTCAGTCTCTGAAGA
ACACGACACTTTAGATTCTCTGAGCTATGTTTGAAATCACTTCACATTAG
CCTATAAATCTTAAGATAAAAGCACGATGGCAGACTTCAAGAATATACCC
TTTGCCTTAAGGCATACCAGTGTGCACCGAGGGGAAGCAGTCCTCCCGAG
CAGCAACGAGGTGTGGGCGGAAGCCCTCAGGTTTCCGGCCA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCAAGCCTGAACTTTATGAGACTC
CGTCTCAAAACAACTAAACTATGTAAACAAGGGAAAGAAAGAGCCAGATA
TGGTTGGTGGCTTGTGCTTGTAATGTGAGGCTGAAGATTGCTTGGGGATC
AACCCCTCCCTCCTTAAGTGGTTAGCCAGGGAACTCTCAGAGGTCCCCAA
GACTGTGAAAACTATTGGAATCACTCATGGGTGCCCAGAAGAACTAGACA
GTGCAGCCATATTGCTGAAGATGACACACTCTAGATAAAGAACTGGGAGA
ACCTTTGCTTGAGCTGAACTGCAATTTTTCTCCCTGTTGGCTACATTTCA
GTGTTGGATGGCTCCAGTCAGGCCATTGAGAGAAAAAAGTCATCACGCTC
AAAGCTGGAGACCCTGTGCTAAAATAGTGAGCTACCTGCTAAGACATGCC
CACTGGTGAAATAATAGCAAGGATAGGCTGGGGATAGCCAAATGCCCACT
GATTGCTTTTGCAGGTGAGAATTCATGCCTGCTACTTTAGAATTTGTGGG
AGGGAATTCACTCCTGACTGTAGGAACTTCCCAGAAGCCTATAGCTTAGA
AGCCTGTAGCTTACATATCTTTATTAGGATTTTAGTACCTGTGCCTCCTT
GTTTTCTTGGTTTTTTGCTCTCTTCCCCATCTGACCTCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_d01.b1 MSMg01no408_d01.b1 CHROMAT_FILE:
MSMg01no408_d01.b1 PHD_FILE: MSMg01no408_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:05 2005
         (629 letters)



>mm_chr5_99184208_99185236
          Length = 1029

 Score = 1164 bits (602), Expect = 0.0
 Identities = 611/614 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcactgaagtcttctgaagatcaaaccaaatgcaattaattataagtaattaagc 75
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ggaattcactgaagtcttatgaagatcaaaccaaatgcaattaattataagtaattaagc 770

                                                                       
Query: 76  agtggggagaaacccaggttcaaccagtgagatcgatctgaattgtaatgtatgaccaat 135
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 agtggggagaaacccagtttcaaccagtgagatcgatctgaattgtaatgtatgaccaat 710

                                                                       
Query: 136 actatagatatttaagtaacagattacaggttttgtacttttaaacttgagagaaaagtg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 actatagatatttaagtaacagattacaggttttgtacttttaaacttgagagaaaagtg 650

                                                                       
Query: 196 agatataacaaaattgcctgcttgtaccacataagacaaaacttcaacccaggcagagac 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agatataacaaaattgcctgcttgtaccacataagacaaaacttcaacccaggcagagac 590

                                                                       
Query: 256 tttcccaaggcatggtgacctaagcgccactggaccatgcaatcggtaaaactgtcgtgc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tttcccaaggcatggtgacctaagcgccactggaccatgcaatcggtaaaactgtcgtgc 530

                                                                       
Query: 316 gtcagggcctttgattggcacgctcactctcgcttctctgacgcatgcaggatttatcta 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtcagggcctttgattggcacgctcactctcgcttctctgacgcatgcaggatttatcta 470

                                                                       
Query: 376 ctacctgaaatcaagttaccatttcacagacatattgtccacaataatacgttccctgtg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctacctgaaatcaagttaccatttcacagacatattgtccacaataatacgttccctgtg 410

                                                                       
Query: 436 cattttctaacttagtgagtgtctgggatcatgaggagatcagcagaggaattggcaaga 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cattttctaacttagtgagtgtctgggatcatgaggagatcagcagaggaattggcaaga 350

                                                                       
Query: 496 gcagagaaattcagtctctgaagaacacgacactttagattctctgagctatgtttgaaa 555
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 349 gcagagaaattcagtctctgaagaacaggacactttagattctctgagctatgtttgaaa 290

                                                                       
Query: 556 tcacttcacattagcctataaatcttaagataaaagcacgatggcagacttcaagaatat 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcacttcacattagcctataaatcttaagataaaagcacgatggcagacttcaagaatat 230

                         
Query: 616 accctttgccttaa 629
           ||||||||||||||
Sbjct: 229 accctttgccttaa 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_d01.g1 MSMg01no408_d01.g1 CHROMAT_FILE:
MSMg01no408_d01.g1 PHD_FILE: MSMg01no408_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:05 2005
         (551 letters)



>mm_chr5_98988653_98989603
          Length = 951

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcaagcctgaactttatgagactccgtctcaaaacaactaaactatgtaaacaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcaagcctgaactttatgagactccgtctcaaaacaactaaactatgtaaacaaggg 260

                                                                       
Query: 61  aaagaaagagccagatatggttggtggcttgtgcttgtaatgtgaggctgaagattgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaagagccagatatggttggtggcttgtgcttgtaatgtgaggctgaagattgctt 320

                                                                       
Query: 121 ggggatcaacccctccctccttaagtggttagccagggaactctcagaggtccccaagac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 321 ggggatcaacccctccctccttaagtggttagccagggaactctcagaggtcctgaagac 380

                                                                       
Query: 181 tgtgaaaactattggaatcactcatgggtgcccagaagaactagacagtgcagccatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgaaaactattggaatcactcatgggtgcccagaagaactagacagtgcagccatatt 440

                                                                       
Query: 241 gctgaagatgacacactctagataaagaactgggagaacctttgcttgagctgaactgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgaagatgacacactctagataaagaactgggagaacctttgcttgagctgaactgca 500

                                                                       
Query: 301 atttttctccctgttggctacatttcagtgttggatggctccagtcaggccattgagaga 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctttctccctgttggctacatttcagtgttggatggctccagtcaggccattgagaga 560

                                                                       
Query: 361 aaaaagtcatcacgctcaaagctggagaccctgtgctaaaatagtgagctacctgctaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaagtcatcacgctcaaagctggagaccctgtgctaaaatagtgagctacctgctaag 620

                                                                       
Query: 421 acatgcccactggtgaaataatagcaaggataggctggggatagccaaatgcccactgat 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 acatgcccactggtgaaataatagcaaggataggctggagatagccaaatgcccactgat 680

                                                                       
Query: 481 tgcttttgcaggtgagaattcatgcctgctactttagaatttgtgggagggaattcactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcttttgcaggtgagaattcatgcctgctactttagaatttgtgggagggaattcactc 740

                      
Query: 541 ctgactgtagg 551
           |||||||||||
Sbjct: 741 ctgactgtagg 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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